Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25970 805 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G27610 452 / 1e-147 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G13650 426 / 1e-135 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G09040 417 / 8e-133 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G53360 405 / 9e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33990 406 / 1e-130 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G47840 394 / 2e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G33680 394 / 5e-127 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 391 / 2e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G11290 394 / 5e-126 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G058900 [exp] 449 / 3e-144 AT4G13650 1282 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G184800 [exp] 436 / 2e-141 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G466066 [exp] 429 / 3e-139 AT4G33990 1067 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G021700 [exp] 425 / 3e-139 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.018G067500 [exp] 431 / 4e-138 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G018700 [exp] 422 / 5e-136 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G191000 [exp] 414 / 1e-133 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G155100 [exp] 413 / 1e-133 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G187800 [exp] 419 / 2e-133 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030249 [exp] 936 / 0 AT3G25970 747 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10004002 [exp] 592 / 0 AT3G25970 489 / 3e-168 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 438 / 1e-143 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 445 / 7e-143 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10032091 [exp] 435 / 5e-142 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10019735 [exp] 426 / 4e-138 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10022890 [exp] 417 / 4e-135 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004892 [exp] 412 / 3e-132 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10008967 [exp] 409 / 4e-131 AT4G21300 876 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10024936 [exp] 407 / 4e-131 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0109 [poplar] [flax] CDA PF14432 [poplar] [flax] DYW_deaminase DYW family of nucleic acid deaminases
Representative CDS sequence Show only first row Show all	>Potri.007G146800.1 pacid=42765592 polypeptide=Potri.007G146800.1.p locus=Potri.007G146800 ID=Potri.007G146800.1.v4.1 annot-version=v4.1 ATGAGGCCGTTGAATTCAGTGGTTGAGAGCTCAAGACATGCTTTGTACAACGTTTTCTTAACCCATTGCCAGGCCTTCAAATCAGGTATTATTTCCCACA TTTACGTTGCCAACAACATCCTCTTTCGCTATTCAAAATGTTTCTCTGGAGACTTAAATCTTGCATGCAAACTGTTCGACGAAATGCCCCACAAAGACAC CGTTACCTGGAACACCATGATCACTGGCTATGTAGAGTCTGGGAACTTGGGTGCTGCTTGGGAGTTTCTAAAATCCATGAAAAGACGTGGCTTTCAAGCT GATGGTTATACCTTTGGAAGTATACTAAAAGGGGTAGCTCACGCCTGTCGACATGATCTTGGGCAACAAGTGCATTCCTTGATTGTTAAGATTGGTTATG AGCAGAGTGTTTATGCGGGTAGCGCTTTATTGGACATGTATGCCAAGTGTGAGAGAGTTGAAGATGCGTATGATGTGTTTCAAGGCATGCCAGTGCGTAA TTTTGTCTCGTGGAATGCACTCATCGATGGCTTTGTGCAAGTCGGAGACCGCGACACTGCATTTTGGCTATTAGATTGTATGCAGAAGGAAGGTGTTAGG GTTGAAGATGGCACATTTGCTCCGCTTTTGACATTGCTTGATGGTGACAAGTTCTATAAGTTGACGATGCAGCTTCACTGTAAGATTATTAAACATGGCC TTGAGTTCTACAATGCTTTATGTAATGCTACACTCACTGCATATTCAGAATGTGGTTTGTTAGAAGATGCTAAAAGGGTGTTTGATGGTGCTGTTGGTAC CCGAGATTTGGTTACCTGGAATTCCATGCTAGTAGCTTACCTAGTTCATGATAAAGATGAGGATGCATTTAATCTTTTCTTGGAGATGCAAGGGTTTGGC TTCGAGCCCGACATCTATACCTATACCTGTGTCATAAGTGCTTGTTTTGCAGCAGCGCATAAAAATTATGGGAAATCCTTCCACGCATTGGTGATAAAGA GGGGACTGGAAGAATCAGTGACTATCTGCAATGCATTAATAACTATGTATCTCAAATTGAATAATAAATCCATGGAAGCTGCGTTAAACTTGTTCCATTC CATGAAGTCTAAGGACCGAGTCTCTTGGAATTCCATTTTAACCGGGTTTTCACAAATGGGGTTTAGTGAAGATGCTTTGAAACTCTTTGGGCATATGAGA TCTTCACTGGAGGAAATTGATGACTATGCCTATTCGGCTGTCCTTAGATCTTGCTCAGATTTAGCAATCCTCCAATTAGGCCAACAGATTCATCTCCTGA CTGTTAAGACAGGTTTTGACTCAAATGATTTTGTAGCCAGTTCATTGATTTTTATGTACTCCAAGTGTGGAATTATTGAAGATGCTTGGAAATGTTTTGA AGATACCACAAAAGAAAGCTCAATTACTTGGAATTCAATTATGTTTGCATATGCACAACATGGGCAGGGTGATGTTGCACTGGACCTCTTCTCCATAATG AGAGAGAGAGAGGTGAAGCTGGATCATGTAACCTTTGTTGCAGTTCTGACCGCATGTAGCCACGTTGGACTGGTTGAACAAGGTCGCTGTGTTCTAAAAT CCATGGAATCTGACTACGGGATTCCTCCTCGGATGGAGCATTATGCTTGTGCGGTTGATTTATTTGGTCGTGCTGGATATCTGGAGGAGGCAAAAGCCTT GATTGATTCAATGCCATTTCAACCCAATGCAATGGTGTTGAAAACTCTATTGGGTGCTTGTAGGGCTTGTGGTAACATTGAGTTAGCTGCTCAGGTAGCA AGCCAGCTGCTAGAGGTAGAGCCTGAAGAGCACTGCACGTACGTTATCCTCTCAAACATGTATGGGCATCTTAAGAGGTGGGATGACAAAGCCTCTGTGA CAAGACTGATGAGGGAGAGGAAGGTGAAGAAGGTCCCTGGTTGGAGTTGGATAGAGGTGAAGAATGAGGTACATGCATTCAAGGCTGAAGATCGATCCCA CCCCTATTCCGAAGATGTGTATCAGATATTGGGAGAATTAATGGAAGAAATGAAGAGGCTACATTCTCTTGCTAGCTTTGATTCTTTGATGCATGATGTC AATCATATGTACCCGAGCAGTGATTTAAGTTACTGA
AA sequence Show only first row Show all	>Potri.007G146800.1 pacid=42765592 polypeptide=Potri.007G146800.1.p locus=Potri.007G146800 ID=Potri.007G146800.1.v4.1 annot-version=v4.1 MRPLNSVVESSRHALYNVFLTHCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQA DGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVR VEDGTFAPLLTLLDGDKFYKLTMQLHCKIIKHGLEFYNALCNATLTAYSECGLLEDAKRVFDGAVGTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFG FEPDIYTYTCVISACFAAAHKNYGKSFHALVIKRGLEESVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFSQMGFSEDALKLFGHMR SSLEEIDDYAYSAVLRSCSDLAILQLGQQIHLLTVKTGFDSNDFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIM REREVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLEEAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVA SQLLEVEPEEHCTYVILSNMYGHLKRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVHAFKAEDRSHPYSEDVYQILGELMEEMKRLHSLASFDSLMHDV NHMYPSSDLSY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25970			Pentatricopeptide repeat (PPR)...		Potri.007G146800 [exp]	0	1
AT5G08310			Tetratricopeptide repeat (TPR)...		Potri.005G090600 [exp]	1.41	0.9410
AT1G18450		ATARP4	actin-related protein 4 (.1)		Potri.012G061300 [exp]	1.73	0.9265	ARP901,ARP4.2
AT5G04780			Pentatricopeptide repeat (PPR)...		Potri.010G241100 [exp]	2.00	0.9311
AT1G03100			Pentatricopeptide repeat (PPR)...		Potri.005G212400 [exp]	2.44	0.9160
AT4G34360			S-adenosyl-L-methionine-depend...		Potri.004G150200 [exp]	4.24	0.9053
AT1G69350			Tetratricopeptide repeat (TPR)...		Potri.008G093000 [exp]	6.32	0.9228
AT2G20540		MEF21	mitochondrial editing factor ...		Potri.018G035900 [exp]	6.48	0.8673
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Potri.002G198600 [exp]	6.63	0.8918
AT2G20710			Tetratricopeptide repeat (TPR)...		Potri.013G132500 [exp]	8.48	0.8724
AT3G22450			Ribosomal L18p/L5e family prot...		Potri.008G153100 [exp]	8.77	0.9100

Compare expression of checked genes

Potri.007G146800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.