Plant FIBer expression Database

Potri.007G147100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44140 534 / 0 Peptidase family C54 protein (.1.2)
AT3G59950 511 / 3e-179 Peptidase family C54 protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G000500
[exp]
778 / 0 AT2G44140 523 / 0.0 Peptidase family C54 protein (.1.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027079
[exp]
594 / 0 AT2G44140 552 / 0.0 Peptidase family C54 protein (.1.2)
Lus10025609
[exp]
577 / 0 AT2G44140 547 / 0.0 Peptidase family C54 protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0125 Peptidase_CA PF03416 Peptidase_C54 Peptidase family C54
Representative CDS sequence
>Potri.007G147100.1 pacid=42766393 polypeptide=Potri.007G147100.1.p locus=Potri.007G147100 ID=Potri.007G147100.1.v4.1 annot-version=v4.1
ATGAAGGTTTTTCGTGATAGGGGGGCTGTTTCTCCATCTAAAACTACTACAACTGACACCCCAAAGAGTTCTTTTATATCTGATTCTTCAGAACCGGGGT
CCACCGACACTAAGGTTTCCAAGCCTTCTTTGTGGTCAAGCTTCTTCGCATCTGCTTTCTCGGTCTTTGATATATATCGCGACTCGTCTTCAACTAGTCA
CAACGAAGCACCTCATATTAGACATAGTAATGGTTGGACGTCATCTGTGAAGAAAATAGTGGCAGGTGGCACAATGAGGAGAATCCAAGAGCGTGTATTA
GGGACAAGCAAGACAGGGATATCTAACACGACTAGTGACATATGGCTTCTAGGAGCGCGCTACAAGATTTCACAAGATGACTCTTCTGGGAATGCAGATG
CTACCAATGCTTTAGCTGCATTTCATCGTGATTTTTCATCACGAATTCTAATCACGTATAGAAAAGGTTTTGATATGATTGAAGATTCAAAACTTACAAG
TGATGTAAACTGGGGTTGTATGCTTCGGAGTAGTCAGATGCTTGTTGCTCAGGCATTGCTTTTTCATCGATTAGGGAGATCTTGGAGAAAACCAGTGGAC
AAGCCATTGGATCGAGATTATGTTGAGATCTTACATCTTTTTGGTGATTCGGAGGCATCGGCTTTCTCTATTCACAATCTTCTTCAAGCTGGAAAGGCTT
ATGGACTTGCAGCTGGATCATGGGTAGGCCCTTATGCCATGTGCCGCTCTTGGGAATCTCTAGCCCGCTCTAAGAGAGAGGAAACCAATCTTGAATACCA
GACACTTCCAATGGCTGTTTATGTTGTTTCTGGTTGTGAAGATGGGGAGCGAGGGGGAGCTCCAGTTCTCAGTATTGAAGATGCTGCTAGACATTGTTCA
GAGTTTTCTAAAGGTCGAGAAGATTGGACGCCAATTCTTCTGCTGGTTCCTTTGGTTCTTGGGCTTGACAAAATAAATCCAAGGTATATTCCATCCCTGC
AGGCAACATTCACCTTTCCCCAAAGCCTTGGAATTTTGGGTGGGAAACCTGGTGCTTCAACTTACATTGTTGGTGTGCAAGATGAGAATGCTTTTTATCT
TGATCCACATGAAGTTCAGCCGGTGGTCAATTTTAGCAGAGATGATGTAGAGGCCAATACTTCATCTTACCACTGCGATGTTGTGCGGCACATTCCTCTG
GATTTGATTGATCCATCCTTGGCAATTGGATTTTATTGTCGAGACAAAGATGATTTTGATGATTTCTGTTCACTGGCATCCAAGCTGGCAGACGAATCAA
ATGGTGCCCCGTTGTTTACGGTGGCTAATTCCTATAAATCATCAAAGCATGATAGTAGTGAGGTCCGAGATGATGATCCCCTTGGTGTAATGACTATGAA
TGATGCAGAGGGCTGCTTAAACGAGGATGACTGGCAACTCCTTTAA
AA sequence
>Potri.007G147100.1 pacid=42766393 polypeptide=Potri.007G147100.1.p locus=Potri.007G147100 ID=Potri.007G147100.1.v4.1 annot-version=v4.1
MKVFRDRGAVSPSKTTTTDTPKSSFISDSSEPGSTDTKVSKPSLWSSFFASAFSVFDIYRDSSSTSHNEAPHIRHSNGWTSSVKKIVAGGTMRRIQERVL
GTSKTGISNTTSDIWLLGARYKISQDDSSGNADATNALAAFHRDFSSRILITYRKGFDMIEDSKLTSDVNWGCMLRSSQMLVAQALLFHRLGRSWRKPVD
KPLDRDYVEILHLFGDSEASAFSIHNLLQAGKAYGLAAGSWVGPYAMCRSWESLARSKREETNLEYQTLPMAVYVVSGCEDGERGGAPVLSIEDAARHCS
EFSKGREDWTPILLLVPLVLGLDKINPRYIPSLQATFTFPQSLGILGGKPGASTYIVGVQDENAFYLDPHEVQPVVNFSRDDVEANTSSYHCDVVRHIPL
DLIDPSLAIGFYCRDKDDFDDFCSLASKLADESNGAPLFTVANSYKSSKHDSSEVRDDDPLGVMTMNDAEGCLNEDDWQLL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44140 Peptidase family C54 protein (... Potri.007G147100
[exp]
0 1
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.004G062500
[exp]
2.64 0.8366
AT4G32600 RING/U-box superfamily protein... Potri.006G247000
[exp]
3.00 0.8116
AT4G27650 PEL1 PELOTA, Eukaryotic release fac... Potri.005G204500
[exp]
3.16 0.7930 PEL1.2
AT3G43230 RING/FYVE/PHD-type zinc finger... Potri.006G135800
[exp]
4.24 0.8239
AT1G29800 RING/FYVE/PHD-type zinc finger... Potri.011G071900
[exp]
4.47 0.7980
AT1G76390 PUB43 plant U-box 43, ARM repeat sup... Potri.002G007800
[exp]
8.36 0.7271
AT3G51730 saposin B domain-containing pr... Potri.016G133400
[exp]
21.21 0.7882
AT3G28970 AAR3 antiauxin-resistant 3, Domain ... Potri.017G084300
[exp]
41.83 0.7756
AT3G27020 YSL6 YELLOW STRIPE like 6 (.1) Potri.001G327300
[exp]
42.98 0.6696
AT2G25740 ATP-dependent protease La (LON... Potri.018G046700
[exp]
48.49 0.6766

Potri.007G147100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.