Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G44150 478 / 8e-170 SDG7, ASHH3 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) AT3G59960 362 / 3e-124 SDG24, ASHH4 SET DOMAIN PROTEIN 24, histone-lysine N-methyltransferase ASHH4 (.1) AT4G30860 221 / 2e-67 SDG4, ASHR3 ASH1-related 3, SET domain group 4 (.1) AT1G77300 149 / 2e-39 ASHH2, CCR1, SDG8, EFS, LAZ2 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) AT1G76710 127 / 2e-32 ASHH1 ,SDG26 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) AT5G42400 90 / 2e-19 SDG25, ATXR7 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) AT2G31650 87 / 3e-18 SDG27, TRX1, ATX1 SET DOMAIN PROTEIN 27, homologue of trithorax (.1) AT2G23740 87 / 3e-18 C2H2ZnF AtCZS nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) AT4G27910 86 / 5e-18 SDG16, ATX4 SET domain protein 16 (.1) AT1G05830 85 / 1e-17 SDG30, ATX2 SET DOMAIN PROTEIN 30, trithorax-like protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G000400 [exp] 698 / 0 AT2G44150 471 / 5e-167 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Potri.018G102100 [exp] 210 / 4e-63 AT4G30860 585 / 0.0 ASH1-related 3, SET domain group 4 (.1) Potri.005G182100 [exp] 148 / 8e-39 AT1G77300 807 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.002G079100 [exp] 142 / 5e-37 AT1G77300 820 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Potri.005G195400 [exp] 136 / 8e-36 AT1G76710 657 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Potri.005G260100 [exp] 96 / 3e-21 AT5G42400 397 / 5e-117 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.002G001000 [exp] 96 / 4e-21 AT5G42400 385 / 3e-112 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1) Potri.007G033000 [exp] 95 / 9e-21 AT2G23740 1436 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Potri.005G129800 [exp] 89 / 9e-19 AT2G23740 1468 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039118 [exp] 502 / 3e-179 AT2G44150 434 / 1e-152 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10038740 [exp] 468 / 5e-164 AT2G44150 399 / 5e-137 SET DOMAIN-CONTAINING PROTEIN 7, histone-lysine N-methyltransferase ASHH3 (.1) Lus10003777 [exp] 194 / 2e-56 AT4G30860 451 / 9e-154 ASH1-related 3, SET domain group 4 (.1) Lus10016600 [exp] 148 / 3e-40 AT1G76710 600 / 0.0 ASH1-RELATED PROTEIN 1, ASH1 RELATED PROTEIN 1, SET domain group 26 (.1.2) Lus10028662 [exp] 147 / 2e-38 AT1G77300 774 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10000967 [exp] 147 / 2e-38 AT1G77300 748 / 0.0 LAZARUS 2, CAROTENOID CHLOROPLAST REGULATORY1, ASH1 HOMOLOG 2, histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.1), histone methyltransferases(H3-K4 specific);histone methyltransferases(H3-K36 specific) (.2) Lus10022483 [exp] 98 / 6e-22 AT2G23740 1070 / 0.0 nucleic acid binding;sequence-specific DNA binding transcription factors;zinc ion binding (.1.2) Lus10004012 [exp] 98 / 7e-22 AT3G61740 424 / 2e-136 SET domain protein 14 (.1.2) Lus10010121 [exp] 96 / 4e-21 AT3G61740 1008 / 0.0 SET domain protein 14 (.1.2) Lus10025172 [exp] 94 / 2e-20 AT5G42400 501 / 6e-165 ARABIDOPSIS TRITHORAX-RELATED7, SET domain protein 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00856 [poplar] [flax] SET SET domain
Representative CDS sequence Show only first row Show all	>Potri.007G147200.1 pacid=42766165 polypeptide=Potri.007G147200.1.p locus=Potri.007G147200 ID=Potri.007G147200.1.v4.1 annot-version=v4.1 ATGCTACTTGAAGCCATGCCTGCTGCGAAGAAGAACCTTGATCAACGAATCACCCTTGCATTCAACAAGTTGCTGAAGGACATAGGAAATCAGGTTGAGT TTGAGCTTCCAGATTCATTTAATAAATCAAAGTCTACAGCCTACACCCTTATAAAGCGCAATATATATCTCACTAAGAAGATTAAAAGGCGCCTTGAGGA TGATGGCATATTCTGCTCCTGCAGTGCATCACTGGGTTCCTCTCGTGTGTGTGATAGAGATTGCCATTGCGGGATGCTGCTGTCTAGCTGCTCTTCAGGC TGCAAATGTGGGAGTTCATGCAGCAATAAACCATTCCAGCACCGGCAGGTGAAGAAGATGAAATTAGTGCAGACCGAGAAATGTGGATCTGGGATTGTGG CAGATGAAGATATTAAACAAGGAGAGTTTGTAATAGAGTATGTTGGAGAAGTTATTGATGATAAGACCTGTGAGGAAAGGCTTTGGAAAATGAAACACTG CGGGGAAACAAACTTTTACTTGTGTGAAATCAATCGCGATATGGTTATTGATGCCACATACAAGGGAAACAAGTCAAGATATATAAACCACAGTTGTTCT CCCAACACTGAAATGCAGAAATGGATAATTGATGGTGAGACTAGAATTGGCATATTTGCAACCCGTGACATAAGAAAGGGCGAGCATCTGACATATGATT ATCAGTTTGTTCAATTTGGCGCAGATCAAGATTGCCATTGTGGTTCCTCAGGTTGCAGGAAAAAGCTAGGGGTTAAACCGAGCAAGCCTAAGATGTCTTC AGATGCTGCCTTAAAACTAGTAGCATGCCAGGTGGCAGTATCCTCTCCCAAACTGAAAGCAATGATGTCTGGAAAAGATGTTTATCAGAATGGAGATTTG CACATAGGGAGTTCGCAACGCGCTTTAAGTAGTCTACCAACATACTCCTGTAATTGCATTGGCGAAGTGGTTAGACTATCTCGCCGCACTGATAAGACAT ATTTTGGGATTATTAAACGGTATGATAAGTATTCAAGAAAACACTCGATCATGTTTGAAGATGGCACTGTTAAGTTTCTTGACATGTCAAAAGAAGATTG GGACTTTGTAACTTCGTGA
AA sequence Show only first row Show all	>Potri.007G147200.1 pacid=42766165 polypeptide=Potri.007G147200.1.p locus=Potri.007G147200 ID=Potri.007G147200.1.v4.1 annot-version=v4.1 MLLEAMPAAKKNLDQRITLAFNKLLKDIGNQVEFELPDSFNKSKSTAYTLIKRNIYLTKKIKRRLEDDGIFCSCSASLGSSRVCDRDCHCGMLLSSCSSG CKCGSSCSNKPFQHRQVKKMKLVQTEKCGSGIVADEDIKQGEFVIEYVGEVIDDKTCEERLWKMKHCGETNFYLCEINRDMVIDATYKGNKSRYINHSCS PNTEMQKWIIDGETRIGIFATRDIRKGEHLTYDYQFVQFGADQDCHCGSSGCRKKLGVKPSKPKMSSDAALKLVACQVAVSSPKLKAMMSGKDVYQNGDL HIGSSQRALSSLPTYSCNCIGEVVRLSRRTDKTYFGIIKRYDKYSRKHSIMFEDGTVKFLDMSKEDWDFVTS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G44150		SDG7, ASHH3	SET DOMAIN-CONTAINING PROTEIN ...		Potri.007G147200 [exp]	0	1
AT3G07940			Calcium-dependent ARF-type GTP...		Potri.003G198301 [exp]	2.82	0.7099
AT1G51720			Amino acid dehydrogenase famil...		Potri.001G199600 [exp]	16.06	0.6901
AT3G52190		AtPHF1, PHF1	phosphate transporter traffic ...		Potri.008G029200 [exp]	16.73	0.6500
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.003G096700 [exp]	20.78	0.6569	Pt-CEO1.1
AT1G69340			appr-1-p processing enzyme fam...		Potri.010G161500 [exp]	24.24	0.6298
AT3G28050			nodulin MtN21 /EamA-like trans...		Potri.001G337100 [exp]	30.16	0.6511
AT5G02880		UPL4	ubiquitin-protein ligase 4 (.1...		Potri.006G132000 [exp]	33.01	0.6543
AT1G58030		CAT2	cationic amino acid transporte...		Potri.019G039700 [exp]	35.83	0.6519	Pt-CAT3.3,PtrCAT3
AT3G52030			F-box family protein with WD40...		Potri.009G056500 [exp]	67.86	0.5716
AT1G32230		ATP8, CEO1, RCD...	RADICAL-INDUCED CELL DEATH1, A...		Potri.001G137200 [exp]	79.01	0.6164	CEO1.2

Compare expression of checked genes

Potri.007G147200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.