Plant FIBer expression Database

Pt-MTHFR1.2 (Potri.007G147300) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol Pt-MTHFR1.2
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G44160 1049 / 0 MTHFR2 methylenetetrahydrofolate reductase 2 (.1)
AT3G59970 1033 / 0 MTHFR1 methylenetetrahydrofolate reductase 1 (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.017G000300
[exp]
1170 / 0 AT2G44160 1038 / 0.0 methylenetetrahydrofolate reductase 2 (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10027078
[exp]
1062 / 0 AT3G59970 1037 / 0.0 methylenetetrahydrofolate reductase 1 (.1.2.3)
Lus10025610
[exp]
1059 / 0 AT3G59970 1035 / 0.0 methylenetetrahydrofolate reductase 1 (.1.2.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0086 FAD_oxidored PF02219 MTHFR Methylenetetrahydrofolate reductase
Representative CDS sequence
>Potri.007G147300.2 pacid=42765274 polypeptide=Potri.007G147300.2.p locus=Potri.007G147300 ID=Potri.007G147300.2.v4.1 annot-version=v4.1
ATGAAGGTGATTGATAAGATTAGGGAAGCAGCAGGAGGAGGTGGAGATGCAAATGGCAATGGAGGAGATAATAGCAGCAGCAATAAGGTTGTTTTCTCCT
TCGAGTTCTTTCCTCCAAAGACAGAAGATGGAGTGGACAACCTGTTTGAGAGAATGGACAGAATGGTGGCTCACAATCCTTCCTTTTGTGACATCACTTG
GGGAGCTGGTGGTTCCACCGCAGATCTCACCTTAGACATCGCCAACAAGATGCAGAACATTATTTGTGTCGAGACTATGATGCATCTCACCTGCACCAAC
ATGCCTGTTGAGAAGATCGATCACGCTCTCGAAACAATCAAATCCAATGGAATCCAGAATGTTCTTGCTCTTCGTGGTGATCCTCCTCATGGCCAGGATA
AATTCGTCCAGATCCAAGGCGGCTTCGCTTGCGCTCTCGACCTCGTCAAACATATCAGATCCAAATATGGTGATTACTTCGGCATTACTGTTGCTGGTTA
TCCAGAGGCACATCCTGATGCCATTGGAAGTGATGGATTTGCTACGCCTGAGGATTACCAGAAAGATCTTGCTTATTTGAAGCAGAAGGTGGATGCTGGA
GCTGATCTAATTGTCACACAACTTTTCTATGATACTGATATCTTCCTGAAATTTGTAAATGACTGCCGCCAAATTGGAATCACTTGTCCCATCGTTCCTG
GTATTATGCCTATTAATAACTACAAGGGCTTCTTACGTATGACTGGCTTTTGCAAAACCAAGATACCAGCAGAGGTCACTGCTGCATTGGAGCCTATCAA
GGACAACGAGGAAGCTGTCAGAGCCTATGGAATTCACCTTGGAACTGAAATGTGCAAGAAGATTTTAGCTCATGGAATCAAGACATTGCATCTATATACC
CTGAACATGGAGAAATCTGCTTTAGCCATATTAATGAATCTTGGTTTGATTGAAGAGTCCAAGATTACAAGGGCATTGCCGTGGCGCCCCCCTACAAATG
TTTTCCGTGCAAAAGAAGATGTCCGTCCAATATTCTGGGCTAATCGCCCAAAGAGCTATCTATCAAGGACAATAGGCTGGGACCAGTACCCTCATGGCCG
ATGGGGTGATTCTCATAACCCATCCTATGGTGCTTTATCTGATTACCAGTTCATGCGACCCCGAGCACGTGGCAAGAAACTCTTTGAAGAGTGGGCTAGC
CCCTTGAAAAGCGTCGAGGATATATATGAGAAATTCAAGGTATACTGCCTTGGGAAGTTGAAAAGTAGTCCTTGGTCAGAACTGGAAGGCCTTCAACCTG
AGACAAAAATCATTAATGAACAGCTGGGTAGGATCAACTTGAAGGGATTCCTGACTATCAATAGTCAACCAGCAGTCAACGCTGAAAAATCTGATTCTCC
ATCTGTTGGTTGGGGAGGGCCAGGAGGGTATGTATATCAGAAGGCTTATCTAGAGTTTTTCTGCTCCAAGGAAAAGTTGAATGCTCTTGTTGAGAGGTGC
AAGGCTTTCCCTTTAGTAACTTACATGGCAGTGAACAGAGGAGGGAGTTGGATATCTAATGTTGCTCTGACTGACGTGAATGCTGTAACCTGGGGAGTCT
TCCCAGCAAAAGAGATCATCCAACCAACCGTTGTGGATCCTACCAGCTTCAGTGTGTGGAAGGACGAGGCATTTGAAATCTGGTCAAGAGGATGGGCCTC
CTTGTACCCAGAGGGTGACCCATCCAGAACACTGCTTGAAGAGGTGCAGAACAGCTACTTTTTGGTCAGCTTGGTAGATAACGATTACATCCATGGGGAT
ATTTTTGCTGTCTTCGCAGAATTATGA
AA sequence
>Potri.007G147300.2 pacid=42765274 polypeptide=Potri.007G147300.2.p locus=Potri.007G147300 ID=Potri.007G147300.2.v4.1 annot-version=v4.1
MKVIDKIREAAGGGGDANGNGGDNSSSNKVVFSFEFFPPKTEDGVDNLFERMDRMVAHNPSFCDITWGAGGSTADLTLDIANKMQNIICVETMMHLTCTN
MPVEKIDHALETIKSNGIQNVLALRGDPPHGQDKFVQIQGGFACALDLVKHIRSKYGDYFGITVAGYPEAHPDAIGSDGFATPEDYQKDLAYLKQKVDAG
ADLIVTQLFYDTDIFLKFVNDCRQIGITCPIVPGIMPINNYKGFLRMTGFCKTKIPAEVTAALEPIKDNEEAVRAYGIHLGTEMCKKILAHGIKTLHLYT
LNMEKSALAILMNLGLIEESKITRALPWRPPTNVFRAKEDVRPIFWANRPKSYLSRTIGWDQYPHGRWGDSHNPSYGALSDYQFMRPRARGKKLFEEWAS
PLKSVEDIYEKFKVYCLGKLKSSPWSELEGLQPETKIINEQLGRINLKGFLTINSQPAVNAEKSDSPSVGWGGPGGYVYQKAYLEFFCSKEKLNALVERC
KAFPLVTYMAVNRGGSWISNVALTDVNAVTWGVFPAKEIIQPTVVDPTSFSVWKDEAFEIWSRGWASLYPEGDPSRTLLEEVQNSYFLVSLVDNDYIHGD
IFAVFAEL

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G44160 MTHFR2 methylenetetrahydrofolate redu... Potri.007G147300
[exp]
0 1 Pt-MTHFR1.2
AT2G30395 OFP ATOFP17, OFP17 ovate family protein 17 (.1) Potri.019G128400
[exp]
6.24 0.8443
AT5G49460 ACLB-2 ATP citrate lyase subunit B 2 ... Potri.010G145832
[exp]
7.00 0.9002
AT5G12250 TUB6 beta-6 tubulin (.1) Potri.012G047600
[exp]
10.00 0.8546 TUB11
AT1G79330 ATMC5, AMC6, AT... metacaspase 2b, metacaspase 5 ... Potri.008G081100
[exp]
11.53 0.8085
AT3G55770 LIM WLIM2b WLIM2b, GATA type zinc finger ... Potri.010G193800
[exp]
19.18 0.8763
AT5G23860 TUB8, b-TUB tubulin beta 8 (.1.2) Potri.016G107300
[exp]
19.82 0.8854
AT3G24480 Leucine-rich repeat (LRR) fami... Potri.018G035100
[exp]
22.73 0.8596
AT1G69430 unknown protein Potri.006G159000
[exp]
22.97 0.8595
AT2G28760 UXS6 UDP-XYL synthase 6 (.1.2.3) Potri.008G053100
[exp]
25.19 0.8759 UXS1.2
AT5G54160 ATOMT1 O-methyltransferase 1 (.1) Potri.015G003100
[exp]
29.51 0.8286 COMT1,Pt-OMT1.2

Potri.007G147300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.