Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08410 103 / 2e-28 FTRA2 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1) AT5G23440 98 / 3e-26 FTRA1 ferredoxin/thioredoxin reductase subunit A (variable subunit) 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G255500 [exp] 146 / 5e-45 AT5G08410 78 / 4e-18 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041002 [exp] 108 / 2e-30 AT5G08410 130 / 8e-39 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1) Lus10013448 [exp] 108 / 2e-30 AT5G08410 130 / 5e-39 ferredoxin/thioredoxin reductase subunit A (variable subunit) 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0610 [poplar] [flax] ETAP PF02941 [poplar] [flax] FeThRed_A Ferredoxin thioredoxin reductase variable alpha chain
Representative CDS sequence Show only first row Show all	>Potri.008G002200.1 pacid=42806763 polypeptide=Potri.008G002200.1.p locus=Potri.008G002200 ID=Potri.008G002200.1.v4.1 annot-version=v4.1 ATGAGTACGAGCTTGGCGTTATCGTCGGCTGCCACCGCTGCAGTCAGTTCGGCGTTCCTTGCCACAGATACCAACAAATTCAAATTCAATGCCTTAATTT CACCAAATCCAAGGCTTAATTGCCGCTACTCAATTATTACTCCTACAGCTACTAGTATAGCAACAAGTAGTAGTAGCAGACGAAGAAGAAAAACTGCTGT TTCGTGCTCGGTGGCTTTGGGATCCAACAATTCAGATGATGATGATGAAGAAGAAGAAGAAGAAGAAGCGAAGAAGAAGATTGGAGCAAGGGTTAGGGTG AAGGCCCCGGTGAAGGTTTACCACGTGCCTCGCGTGGCGGAGGAAGTGGATCTGTGTGGATTGGAAGGTGAGGTGAAGCAGTACGTGAGCCAGTGGAAGG GGAGGCGAGTTTCCGCTAATCTTCCTTACAAGACTCAGTTTGTCCACTCAGGAGGAGTCAAATTCTTTGCTCATCTCAGAGAGGACGAATTGCAATTTAT TGATTGA
AA sequence Show only first row Show all	>Potri.008G002200.1 pacid=42806763 polypeptide=Potri.008G002200.1.p locus=Potri.008G002200 ID=Potri.008G002200.1.v4.1 annot-version=v4.1 MSTSLALSSAATAAVSSAFLATDTNKFKFNALISPNPRLNCRYSIITPTATSIATSSSSRRRRKTAVSCSVALGSNNSDDDDEEEEEEEAKKKIGARVRV KAPVKVYHVPRVAEEVDLCGLEGEVKQYVSQWKGRRVSANLPYKTQFVHSGGVKFFAHLREDELQFID

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08410		FTRA2	ferredoxin/thioredoxin reducta...		Potri.008G002200 [exp]	0	1
AT3G15580		APG8H, ATG8I	AUTOPHAGY 8I, AUTOPHAGY 8H, Ub...		Potri.002G189450 [exp]	1.73	0.9555
AT1G34000		OHP2	one-helix protein 2 (.1)		Potri.005G196100 [exp]	4.00	0.9532	OHP2.1
AT1G28150			unknown protein		Potri.004G066900 [exp]	4.89	0.9501
AT3G47650			DnaJ/Hsp40 cysteine-rich domai...		Potri.018G028500 [exp]	14.07	0.9449
AT2G32480		ARASP	ARABIDOPSIS SERIN PROTEASE (.1...		Potri.002G228600 [exp]	14.14	0.9450
AT3G19220		CYO1 ,SCO2	SNOWY COTYLEDON 2, SHI-YO-U ME...		Potri.009G102400 [exp]	16.43	0.9412
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	17.17	0.9462
AT3G08010		ATAB2	RNA binding (.1)		Potri.009G059600 [exp]	19.28	0.9461
AT3G54900		ATGRXCP, CXIP1	GLUTAREDOXIN, CAX interacting ...		Potri.014G141200 [exp]	20.68	0.9486
AT5G52420			unknown protein		Potri.015G146400 [exp]	25.23	0.9434

Compare expression of checked genes

Potri.008G002200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.