Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08390 1007 / 0 Transducin/WD40 repeat-like superfamily protein (.1) AT5G23430 997 / 0 Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G61210 518 / 3e-168 DWA3 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) AT1G11160 482 / 3e-156 Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 115 / 5e-28 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT4G15900 115 / 7e-27 PRL1 pleiotropic regulatory locus 1 (.1) AT1G71840 113 / 1e-26 transducin family protein / WD-40 repeat family protein (.1) AT5G25150 113 / 1e-25 TAF5 TBP-associated factor 5 (.1) AT2G43770 101 / 5e-23 Transducin/WD40 repeat-like superfamily protein (.1) AT1G62020 103 / 2e-22 Coatomer, alpha subunit (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G255400 [exp] 1324 / 0 AT5G08390 927 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.011G045500 [exp] 551 / 0 AT1G61210 723 / 0.0 DWD hypersensitive to ABA 3, Transducin/WD40 repeat-like superfamily protein (.1.2) Potri.006G263400 [exp] 119 / 2e-27 AT5G25150 1018 / 0.0 TBP-associated factor 5 (.1) Potri.010G012800 [exp] 116 / 4e-27 AT4G15900 731 / 0.0 pleiotropic regulatory locus 1 (.1) Potri.018G020200 [exp] 116 / 1e-26 AT5G25150 984 / 0.0 TBP-associated factor 5 (.1) Potri.006G045800 [exp] 112 / 1e-25 AT2G41500 614 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Potri.019G087200 [exp] 108 / 4e-25 AT1G71840 515 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.019G096900 [exp] 105 / 2e-24 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.015G069700 [exp] 108 / 8e-24 AT1G62020 2100 / 0.0 Coatomer, alpha subunit (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013452 [exp] 1118 / 0 AT1G50410 1003 / 0.0 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related (.1) Lus10041007 [exp] 877 / 0 AT5G23430 721 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1.2) Lus10011224 [exp] 531 / 3e-172 AT1G11160 665 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10018458 [exp] 529 / 4e-172 AT1G11160 668 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Lus10041006 [exp] 244 / 3e-76 AT1G11160 168 / 5e-49 Transducin/WD40 repeat-like superfamily protein (.1) Lus10004167 [exp] 116 / 6e-27 AT2G41500 708 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10024447 [exp] 115 / 3e-26 AT5G25150 1006 / 0.0 TBP-associated factor 5 (.1) Lus10021059 [exp] 114 / 3e-26 AT2G41500 706 / 0.0 LACHESIS, WD-40 repeat family protein / small nuclear ribonucleoprotein Prp4p-related (.1) Lus10003487 [exp] 107 / 5e-25 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10014674 [exp] 107 / 6e-25 AT4G02730 508 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat CL0186 [poplar] [flax] PF13925 [poplar] [flax] Katanin_con80 con80 domain of Katanin
Representative CDS sequence Show only first row Show all	>Potri.008G002300.6 pacid=42808720 polypeptide=Potri.008G002300.6.p locus=Potri.008G002300 ID=Potri.008G002300.6.v4.1 annot-version=v4.1 ATGACTACTAAACGCGCCTACAAGCTGCAGGAATTTGTGGCACATTCTTCGAGTGTCAATTGCCTTAAGATTGGCAGGAAATCATCCAGGGTTCTTGTGA CCGGAGGAGAAGATCACAAAGTCAATCTTTGGGCTATTGGTAAGCCCAATGCTATACTGAGTTTGTCCGGACATACAAGTGGGATTGATTCGGTAAGCTT TGATTCTTCAGAAGTCCTTGTAGCTGCAGGAGCTGCGAGTGGCACAATCAAGCTTTGGGATTTAGAGGAGGCAAAAATTGTTCGCACACTCACTGGCCAC AGATCCAATTGCATATCTGTAGACTTTCACCCTTTTGGAGAGTTCTTTGCATCTGGTTCCCTGGACACAAATCTTAAGATATGGGATATCAGAAAGAAGG GCTGTATTCACACTTACAAGGGCCACACTCGAGGAGTGAGTGCAATCAGATTTACCCCAGATGGTCGTTGGGTTGTATCTGGTGGAGAGGACAATACAGT AAAGCTGTGGGATTTGACTGCTGGAAAGCTATTGCACGATTTCAAGTACCATGAGGGCCAGATTCAGTGCATAGATTTTCATCCCCATGAGTTTCTTCTT GCAACAGGTTCTGCTGACAGGACTGTAAAATTTTGGGACCTTGAAACCTTTGAGCTAATAGGTTCTGCTGGGACAGAGACAACTGGAGTGCGTTGTTTGA CCTTTAATCCTGATGGGAGGACTCTACTGTGTGGATTGCATGAAAGTTTGAAAGTTTTCTCATGGGAACCAATAAGATGCCATGACGCCGTGGATGTGGG ATGGTCTAGGTTGTCAGATCTCAATGTTCATGAAGGAAAGCTTCTTGGATGCTCATACAATCAGAGTTGTGTAGGAGTGTGGGTTGTAGATATATCGCGT ATTGAACCGTATGCAATTGGAAATGCCAACCGATTCAACAATCATTCAGAATCTAAATCTGGTGCAATTGGGAACCAATCAGTCCTGCTTGAGAACAACT CAAAGACTAGCATGGGAAGGTTATCTGTTTCACAAAATTCTGATGTTTTAGTAAAGGAAACAAAATCTCTTGGAAGGTTGGCAGTTTCTCAAAATTCAGT TTCTGGGAATGAGGCTTCTAAAGAATCAAAGATTTTGCCATCTGCAGGAAGTGTACCTGGTACTCCTCAAAGAGTGAACTTAAACACTGGGTTGAAGACA ACTATGACCGGACCTCTAACAGTTTCTAGCGGCGCAGCCCCAAAGAGGAGTTCTACAAAGATCCTTTCAGCTGCTAATGTTCCAGTCTTGAACAAGGCAG ATGTCATACCTGTAATTGTCCCCAGAACTAACTCCAGATCAGAGCAAGTAGCTGACTCCAGAAAAGAAATTGGTATTGCTGCTAGGACAATGCCATTTTC TTTGCAGTCAAAGACAACTGATTTCCGGAAATTTTCAAATAGTAGAGAGGACATGGACCAGCCAACTACCTCTACCCAGTCTGAGACAACAGGTTGCAAG GCTACAGAACCGATAAGTGTCGTGGATAGGAATATTACTCCTGCAGTTAAAGCCTCTATTCATGGAATATCAACTGCTGAACGAAATATTGGGGATGATA GATCTATGGGATCTGGAAACTATGAGTCAGATTCGACAACAGAGCCACCCACTAGTTACCAGGAAGAAAACTGTGAGACTCGTGGACATAAAATAAACAG AGATGCACCCACCATCGAGAGTCAGAAAGGAGGAAGAATGCGTTCACTTATGATAAACTGGGAGAAAAGGGGAAGATCTTCTAGCTATGAGGGACCTACT TCCGGCACTTCCACTGGGACAGGATCTGTGGTGAATGTGCTCCCTCTTAATATGTTTAAACAGAGAGGACGCACCCCATCCATTGAAAAGGAAACGGTTT CTGCTTTTGACGAGGATGTTATTGCAGACTTAATGGAACAGCATGACCAATTTGTCAGCTCTATGCAGTCTCGTTCTGCCAAGTTACAGGTTGTCTACAG ATATTGGGAGAGAAATGATGTTAAGGGGGCCATTGGTGCAATGGAGAAGATGGCTGACCATGCTGTCCTTTCTGATGTTATCAGTATCGTGGCTGATAAA ATTGACATTGTCACTTTGGATATATGCACATGTCTCCTGCCACTTCTTACTAACATGCTTGAAAGTGACATGGATAGGCATTTGAGCATTTCCCTGGACA TGCTGCTGAAGCTGGTCAGAATGTTTGGTTCAATGATATATTCAACACTATCAGCGTCAACATCTGTTGGTGTGGATATCGAAGCAGAGCAAAGGCTGGA ACGTTGCAATATCTGCTTTGTAGAGCTTGAAAAAGTCAAACGCTGCCTGCTTACCCTTACAAGGAAAGGGGGATCGGTTGCAAAGTTTGCGCACGAGCTA AATCTAGCTCTTCAAGAAGTATCATGA
AA sequence Show only first row Show all	>Potri.008G002300.6 pacid=42808720 polypeptide=Potri.008G002300.6.p locus=Potri.008G002300 ID=Potri.008G002300.6.v4.1 annot-version=v4.1 MTTKRAYKLQEFVAHSSSVNCLKIGRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGH RSNCISVDFHPFGEFFASGSLDTNLKIWDIRKKGCIHTYKGHTRGVSAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKYHEGQIQCIDFHPHEFLL ATGSADRTVKFWDLETFELIGSAGTETTGVRCLTFNPDGRTLLCGLHESLKVFSWEPIRCHDAVDVGWSRLSDLNVHEGKLLGCSYNQSCVGVWVVDISR IEPYAIGNANRFNNHSESKSGAIGNQSVLLENNSKTSMGRLSVSQNSDVLVKETKSLGRLAVSQNSVSGNEASKESKILPSAGSVPGTPQRVNLNTGLKT TMTGPLTVSSGAAPKRSSTKILSAANVPVLNKADVIPVIVPRTNSRSEQVADSRKEIGIAARTMPFSLQSKTTDFRKFSNSREDMDQPTTSTQSETTGCK ATEPISVVDRNITPAVKASIHGISTAERNIGDDRSMGSGNYESDSTTEPPTSYQEENCETRGHKINRDAPTIESQKGGRMRSLMINWEKRGRSSSYEGPT SGTSTGTGSVVNVLPLNMFKQRGRTPSIEKETVSAFDEDVIADLMEQHDQFVSSMQSRSAKLQVVYRYWERNDVKGAIGAMEKMADHAVLSDVISIVADK IDIVTLDICTCLLPLLTNMLESDMDRHLSISLDMLLKLVRMFGSMIYSTLSASTSVGVDIEAEQRLERCNICFVELEKVKRCLLTLTRKGGSVAKFAHEL NLALQEVS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08390			Transducin/WD40 repeat-like su...		Potri.008G002300 [exp]	0	1
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.011G136700 [exp]	4.89	0.8828
AT4G10840			Tetratricopeptide repeat (TPR)...		Potri.003G143200 [exp]	6.70	0.8898
AT2G35630		GEM1, MOR1	MICROTUBULE ORGANIZATION 1, AR...		Potri.001G443200 [exp]	8.83	0.8447	MOR2,Pt-MOR1.2
AT2G41770			Protein of unknown function (D...		Potri.006G051000 [exp]	9.32	0.8757
AT3G60080			RING/U-box superfamily protein...		Potri.001G231000 [exp]	11.40	0.8603
AT1G13635			DNA glycosylase superfamily pr...		Potri.010G137300 [exp]	13.41	0.8564
AT3G20720			unknown protein		Potri.011G132800 [exp]	15.36	0.7864
AT3G16630		ATKINESIN-13A, ...	P-loop containing nucleoside t...		Potri.008G223000 [exp]	19.33	0.8385
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	22.09	0.8687
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.015G129100 [exp]	23.23	0.8192

Compare expression of checked genes

Potri.008G002300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.