Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08570 934 / 0 Pyruvate kinase family protein (.1) AT5G63680 925 / 0 Pyruvate kinase family protein (.1) AT5G56350 803 / 0 Pyruvate kinase family protein (.1) AT4G26390 785 / 0 Pyruvate kinase family protein (.1) AT3G04050 706 / 0 Pyruvate kinase family protein (.1) AT3G55650 687 / 0 Pyruvate kinase family protein (.1) AT3G25960 680 / 0 Pyruvate kinase family protein (.1) AT3G55810 634 / 0 Pyruvate kinase family protein (.1) AT3G52990 387 / 5e-129 Pyruvate kinase family protein (.1.2) AT2G36580 387 / 6e-129 Pyruvate kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254900 [exp] 1006 / 0 AT5G08570 927 / 0.0 Pyruvate kinase family protein (.1) Potri.001G001600 [exp] 818 / 0 AT5G56350 913 / 0.0 Pyruvate kinase family protein (.1) Potri.003G223100 [exp] 808 / 0 AT5G56350 915 / 0.0 Pyruvate kinase family protein (.1) Potri.013G060400 [exp] 774 / 0 AT5G56350 835 / 0.0 Pyruvate kinase family protein (.1) Potri.019G032600 [exp] 764 / 0 AT5G56350 816 / 0.0 Pyruvate kinase family protein (.1) Potri.008G027100 [exp] 390 / 2e-130 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.006G117400 [exp] 389 / 9e-130 AT3G52990 988 / 0.0 Pyruvate kinase family protein (.1.2) Potri.010G233200 [exp] 381 / 1e-126 AT3G52990 901 / 0.0 Pyruvate kinase family protein (.1.2) Potri.003G088700 [exp] 274 / 9e-85 AT1G32440 836 / 0.0 plastidial pyruvate kinase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041003 [exp] 954 / 0 AT5G08570 928 / 0.0 Pyruvate kinase family protein (.1) Lus10017364 [exp] 923 / 0 AT5G08570 907 / 0.0 Pyruvate kinase family protein (.1) Lus10010159 [exp] 911 / 0 AT5G08570 896 / 0.0 Pyruvate kinase family protein (.1) Lus10010329 [exp] 821 / 0 AT5G56350 930 / 0.0 Pyruvate kinase family protein (.1) Lus10013396 [exp] 813 / 0 AT5G56350 931 / 0.0 Pyruvate kinase family protein (.1) Lus10003439 [exp] 728 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10026875 [exp] 711 / 0 AT5G56350 759 / 0.0 Pyruvate kinase family protein (.1) Lus10013449 [exp] 558 / 0 AT5G08570 543 / 0.0 Pyruvate kinase family protein (.1) Lus10013450 [exp] 368 / 3e-126 AT5G08570 356 / 1e-122 Pyruvate kinase family protein (.1) Lus10008644 [exp] 378 / 1e-125 AT3G52990 967 / 0.0 Pyruvate kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0151 [poplar] [flax] PK_TIM PF00224 [poplar] [flax] PK Pyruvate kinase, barrel domain CL0151 [poplar] [flax] PF02887 [poplar] [flax] PK_C Pyruvate kinase, alpha/beta domain
Representative CDS sequence Show only first row Show all	>Potri.008G002500.4 pacid=42808663 polypeptide=Potri.008G002500.4.p locus=Potri.008G002500 ID=Potri.008G002500.4.v4.1 annot-version=v4.1 ATGATAAATAGATGGATGTCTTTTAATGTTGACTGTTTTTTTCCATCGGTTTTTTTTATTTTTTTTGCAGAAATCAAATTAAAAAAAAAATCAAATCGTA TGGCCAACATAGACATAGAAGGACTCCTAAAGGAGCACCAGGATGATGAAGAGGGGCGTGTCCCCAGGACTAAGATCGTTTGCACTCTAGGACCCTCTTC TCGATCCGTTCCCATGCTGGAGAAGCTTCTCAGGGCTGGCATGAACGTGGCTCGCTTCAATTTCTCCCATGGCACCCACGAGTACCACCAGGAGACCTTG AACAATCTCAGGATTGCCATGCAAAACACCAACATCCTCGCTGCTGTCATGCTCGATACCAAGGGACCTGAAATTCGTACCGGTTTCCTAAAGGATGGAA ACCCAATTCAACTGAAGGAAGGTCAGGAAATCACCATCACGACTGATTACAGCATCAAGGGTGACACAGACATGATCTCCATGAGCTACAAAAAACTGCC CGTGGACATCAAGCCTAGAAATACCATCTTGTGTGCAGATGGCACCATCACCCTCACTGTTTTATCTTGTGATCCAAAGGCTGGAACTGTCAGGTGCCGT TGTGAGAACACTGCAATGCTTGGTGAGAGAAAAAATGTTAATCTTCCTGGTGTTGTTGTGGATCTTCCCACGCTGACTGATAAGGATAAGGAAGACATCT TGGGATGGGGTGTTCCCAACAACATTGATATGATTGCCCTTTCTTTTGTACGCAAGGGCTCCGATCTTGTTAACGTGCGTAAGGTTCTTGGGCCCCATGC CAAGCACATTCAGTTAATGTCAAAGGTGGAGAACCAGGAGGGAGTGGTTAACTTTGATGAGATCTTGCGTGAGACAGACTCCTTCATGGTTGCTCGTGGT GATCTTGGAATGGAGATTCCAGTTGAGAAGATTTTCCTAGCACAGAAGATGATGATATACAAGTGCAATATTGTGGGAAAGCCTGTTGTTACTGCTACTC AGATGCTTGAGTCCATGATCAAGTCTCCTCGGCCAACCCGCGCTGAGGCAACTGATGTTGCCAACGCTGTCCTTGATGGTACTGATTGTGTTATGCTCAG TGGCGAGAGCGCAGCTGGGGCCTATCCAGAGCTTGCAGTCAAGACCATGCGCCGGATTTGTATCGAAGCAGAATCTTCCCTTGACTATGCTGCCATCTTC AAGGAGATGATAAGATCAACTCCACTTCCTATGAGCCCATTGGAGAGCCTTGCATCCTCGGCTGTGCGTACCGCCAACAAAGCCAGAGCAAAGCTCATTG TGGTGTTAACACGGGGCGGGACCACAGCCAAATTGGTTGCCAAGTACAGGCCAGCTGTTCCAATCCTTTCCGTGGTTGTTCCTGTACTGACAACTGACTC ATTTGACTGGACCTGCAGTGATGAGACCCCTGCAAGGCATAGTCTGATATACAGGGGCTTGATTCCCCTTTTGGCAGAAGGATCTGCCAAGGCCACAGAT GCAGAATCTACCGAGGTGATTTTGGAAGCTGCTCTAAAATCAGCAACGAAGAGAGGATTGTGCAAGCCTGGTGATGCAGTTGTTGCACTTCATCGCATTG GAGCTGCCTCTGTTATAAAAATATGTTTAGTGAAATGA
AA sequence Show only first row Show all	>Potri.008G002500.4 pacid=42808663 polypeptide=Potri.008G002500.4.p locus=Potri.008G002500 ID=Potri.008G002500.4.v4.1 annot-version=v4.1 MINRWMSFNVDCFFPSVFFIFFAEIKLKKKSNRMANIDIEGLLKEHQDDEEGRVPRTKIVCTLGPSSRSVPMLEKLLRAGMNVARFNFSHGTHEYHQETL NNLRIAMQNTNILAAVMLDTKGPEIRTGFLKDGNPIQLKEGQEITITTDYSIKGDTDMISMSYKKLPVDIKPRNTILCADGTITLTVLSCDPKAGTVRCR CENTAMLGERKNVNLPGVVVDLPTLTDKDKEDILGWGVPNNIDMIALSFVRKGSDLVNVRKVLGPHAKHIQLMSKVENQEGVVNFDEILRETDSFMVARG DLGMEIPVEKIFLAQKMMIYKCNIVGKPVVTATQMLESMIKSPRPTRAEATDVANAVLDGTDCVMLSGESAAGAYPELAVKTMRRICIEAESSLDYAAIF KEMIRSTPLPMSPLESLASSAVRTANKARAKLIVVLTRGGTTAKLVAKYRPAVPILSVVVPVLTTDSFDWTCSDETPARHSLIYRGLIPLLAEGSAKATD AESTEVILEAALKSATKRGLCKPGDAVVALHRIGAASVIKICLVK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08570			Pyruvate kinase family protein...		Potri.008G002500 [exp]	0	1
AT2G36460			Aldolase superfamily protein (...		Potri.006G165700 [exp]	4.35	0.7753
AT1G58440		SQE1, XF1	SQUALENE EPOXIDASE 1, FAD/NAD(...		Potri.015G120900 [exp]	6.63	0.6890
AT5G58375			Methyltransferase-related prot...		Potri.019G127900 [exp]	9.48	0.6887
AT3G02550	AS2	LBD41	LOB domain-containing protein ...		Potri.012G056800 [exp]	17.49	0.6439
AT4G10270			Wound-responsive family protei...		Potri.019G117402 [exp]	19.28	0.6854
AT1G77120		ADH1, ATADH, AT...	ARABIDOPSIS THALIANA ALCOHOL D...		Potri.002G072100 [exp]	20.49	0.5782
AT4G10270			Wound-responsive family protei...		Potri.019G117500 [exp]	23.51	0.6503
AT4G10265			Wound-responsive family protei...		Potri.019G117700 [exp]	24.49	0.6609
AT2G44310			Calcium-binding EF-hand family...		Potri.014G161200 [exp]	25.45	0.6456
AT5G07480		KUOX1	KAR-UP oxidoreductase 1 (.1)		Potri.001G080600 [exp]	27.54	0.6421

Compare expression of checked genes

Potri.008G002500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.