Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08550 693 / 0 ILP1 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) AT5G09210 327 / 3e-100 GC-rich sequence DNA-binding factor-like protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G020200 [exp] 158 / 1e-44 AT5G08550 73 / 2e-15 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) Potri.006G020400 [exp] 154 / 3e-43 AT5G08550 69 / 3e-14 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001949 [exp] 801 / 0 AT5G08550 848 / 0.0 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1) Lus10001926 [exp] 798 / 0 AT5G08550 828 / 0.0 increased level of polyploidy1-1D, GC-rich sequence DNA-binding factor-like protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07842 [poplar] [flax] GCFC GC-rich sequence DNA-binding factor-like protein
Representative CDS sequence Show only first row Show all	>Potri.008G002600.4 pacid=42808737 polypeptide=Potri.008G002600.4.p locus=Potri.008G002600 ID=Potri.008G002600.4.v4.1 annot-version=v4.1 ATGAGCAGCTCCTCCAAGTCCAGAAACTTCCGGCGGCGAGGCGACGTTGACGATGAAAAGACCGACGCCAACACCAATAACACTGACACCAACGCCAAAG CCACCCCCTCCACCACCCGGAAGCCACCACCACCCCAATCTACAAAGCCAAAACCAAAGAAGCTCCTAAGTTTTGCCGAAGATGAAGAAGATGAACAAGC TGTCACCCGTATTCCCTCCTCCAAATCCAAACCAAAACCTAAACCTAAACCAACCTCCTCTTCCTCTCACAAATTGACCGTATCCCAAGATAGACTTCCT CCAACAACCTCCTACTTAACGACAGCATCCAATGTCCAACCTCAAGCAGGTACTTACACTAAGGAAGCCCTTCTTGAGCTCCAGAGAAACACCCGCACCC TCGCTAAATCCACAAAGACCACCACCCCTGCCTCCGCGTCTGAACCTAAAATTATCCTCAAAGGTCTCCTTAAACCCTCCTTTAGCCCTAGCCCTAACCC TAACCCTAATTATTCTTCTAATCATCAACAACAAGACGATGCCGACGACCAGTCGGAAGATGAGAACGAGGATAAAGATAACGGTGCCGACGACGCACAG AATCGATTGGCTTCTATGGGATTGGGGAAATCCACTTCTGATGATTATTCCTGCTTTCCCGACGAGGATACTATTAAGAAGATTAGGGCCAAGAGAGAGC GGTTGAGGCAATCAAGGGCCGCCGCTCCTGATTATATATCATTGGATTCTGGGAGTAATCATCAAGGCGGATTCAGTGACGAGGAGCCTGAGTTTAGGAC TAGGATTGCCATGATTGGCACCATGACCAAGGACACTGCTACTCATGGAGGAGTTTTTGATGCAGCTGCTGATGACGATGAAGATGACGATGATGATCGC TCCATCAAGGCAAAAGCATTGGCAATGATGGGTACTCATCATCATCATGCTGTTGTGGATGATGGGAATGTTGCTGCTGCTGCTTCTGTTGTTCATGATG AGGAGGATGAGGAGGACAGGATTTGGGAGGAAGAACAATTTAGGAAGGGATTAGGAAAGAGGATGGATGATGCTTCTGCTCCTATTGCTAATAGGGCTCT TGCCAGCACTGCTGGTGCTGCTGCTTCTAGTACTATTCCTATGCAACCTCAGCAGAGGCCGACGCCAGGCTATGGTTCAATTCCAAGCATTGGAGGGGCA TTTGGATCTTCTCAAGGATTGGATGTCTTGTCTATTCCACAACAAGCTGATATTGCTAAGAAAGCTTTGCAAGACAACCTCAGGAGGCTTAAGGAATCTC ATGGTAGAACGATTTCATTGCTGTCAAAGACTGATGAGAATTTATCTGCCTCGCTAATGAATGTTACTGCTCTTGAAAAGTCTATATCTGCTGCTGGTGA GAAGTTCATCTTTATGCAAAAGCTTCGTGACTTTGTTTCTGTTATATGTGAATTTTTGCAGCATAAAGCTACTTTAATTGAGGAACTTGAAGAGAGGATG CAGAAGCTTCATGAAGAACAGGCATCACTTATCTTAGAAAGAAGAACTGCTGATAATGAGGATGAAATGATGGAGGTAGAAGCAGCAGTGAAAGCAGCGA TGTCAGTTTTCAGTGCAAGAGGTAATTCTGCAGCAACAATTGATGCTGCCAAAAGTGCTGCAGCAGCTGCATTAGTTGCCTTGAAAGATCAAGCAAATCT GCCAGTGAAGTTAGATGAATTTGGCAGAGATATCAACTTGCAGAAACGGATGGATATGGAGAAAAGGGCTAAGGCTCGTCAACGCAGGAAAGCTCGTTTT GATTCGAAGAGATTGTCATACATGGAGGTGGATAGTTCTGACCAGAAAATCGAGGGAGAATTGAGCACGGATGAGAGTGACAGTGACAGTGAAAAAAATG CTGCTTACCAGTCAACCCGTGATTTGTTGCTCCGGACTGCGGAGGAGATCTTCAGTGATGCTTCTGAAGAATATTCCCAACTTTCAGTGGTCAAAGAAAG ATTTGAAACATGGAAGAAAGAATATTTTGCAAGCTATAGAGATGCTTACATGTCACTCAGTGCACCTGCTATTTTTTCTCCTTATGTGAGACTAGAACTC CTAAAATGGGACCCGCTTCATGAGGATTCAGATTTTTTTGATATGAAATGGCACTCTCTACTATTTAATTATGGTCTGCCAGAAGACGGAAGTGATCTCA ATCCAGATGATGTTGATGCTAACCTTGTACCTGGACTAGTGGAGAAGATTGCAATTCCTATTTTGTATCATGAGATTGCCCATTGTTGGGACATGCTTAG CACTCAAGAGACGAAAAATGCCATTTCTGCCACAAGCTTGGTAATAAATTATGTTCCGGCTACTAGTGAGGCTCTATCAGAGCTACTAGCTGCAATCCGC ACCCGTCTAGCTGATGCAGTTGCTAGTACAGTGGTCCCAACATGGAGCCTGCTTGTGCTGAAGGCTGTGCCGAGTGCTGCACAAGTTGCAGCGTACCGGT TTGGAATGTCTGTTCGTTTGATGAGGAATATCTGCTTGTGGAAAGATATCCTGGCATTGCCAGTTCTTGAGAAGCTTGTCCTTGATGAGCTTTTGTGTGG GAAGGTACTGCCTCATGTTCGAAGCATTGCATCAAATGTTCATGATGCAGTCACAAGAACTGAAAGAATTGTTGCTTCTTTATCTAGGGCTTGGGCAGGT CCAAGTGCCACCAGTGATCACAGCAGCCACAAGTTGCAGCCACTGGTGGATTTCATTTTATCAATAGGAATGACACTGGAGAAAAGACATGTATCAGGTG TCACCGAGACTGAGACTAGTGGACTTGCTCGTCGATTGAAGAAGATGCTCGTTGAGCTGAATGATTATGACAATGCTCGGGACATGGCTAGAACCTTCCA TCTGAAGGAGGCGTTGTGA
AA sequence Show only first row Show all	>Potri.008G002600.4 pacid=42808737 polypeptide=Potri.008G002600.4.p locus=Potri.008G002600 ID=Potri.008G002600.4.v4.1 annot-version=v4.1 MSSSSKSRNFRRRGDVDDEKTDANTNNTDTNAKATPSTTRKPPPPQSTKPKPKKLLSFAEDEEDEQAVTRIPSSKSKPKPKPKPTSSSSHKLTVSQDRLP PTTSYLTTASNVQPQAGTYTKEALLELQRNTRTLAKSTKTTTPASASEPKIILKGLLKPSFSPSPNPNPNYSSNHQQQDDADDQSEDENEDKDNGADDAQ NRLASMGLGKSTSDDYSCFPDEDTIKKIRAKRERLRQSRAAAPDYISLDSGSNHQGGFSDEEPEFRTRIAMIGTMTKDTATHGGVFDAAADDDEDDDDDR SIKAKALAMMGTHHHHAVVDDGNVAAAASVVHDEEDEEDRIWEEEQFRKGLGKRMDDASAPIANRALASTAGAAASSTIPMQPQQRPTPGYGSIPSIGGA FGSSQGLDVLSIPQQADIAKKALQDNLRRLKESHGRTISLLSKTDENLSASLMNVTALEKSISAAGEKFIFMQKLRDFVSVICEFLQHKATLIEELEERM QKLHEEQASLILERRTADNEDEMMEVEAAVKAAMSVFSARGNSAATIDAAKSAAAAALVALKDQANLPVKLDEFGRDINLQKRMDMEKRAKARQRRKARF DSKRLSYMEVDSSDQKIEGELSTDESDSDSEKNAAYQSTRDLLLRTAEEIFSDASEEYSQLSVVKERFETWKKEYFASYRDAYMSLSAPAIFSPYVRLEL LKWDPLHEDSDFFDMKWHSLLFNYGLPEDGSDLNPDDVDANLVPGLVEKIAIPILYHEIAHCWDMLSTQETKNAISATSLVINYVPATSEALSELLAAIR TRLADAVASTVVPTWSLLVLKAVPSAAQVAAYRFGMSVRLMRNICLWKDILALPVLEKLVLDELLCGKVLPHVRSIASNVHDAVTRTERIVASLSRAWAG PSATSDHSSHKLQPLVDFILSIGMTLEKRHVSGVTETETSGLARRLKKMLVELNDYDNARDMARTFHLKEAL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08550		ILP1	increased level of polyploidy1...		Potri.008G002600 [exp]	0	1
AT1G27750			nucleic acid binding (.1)		Potri.014G017000 [exp]	1.41	0.9238
AT3G02065			P-loop containing nucleoside t...		Potri.014G140100 [exp]	2.82	0.8888
AT2G40770			zinc ion binding;DNA binding;h...		Potri.019G060900 [exp]	2.82	0.9136
AT1G30480		DRT111	DNA-DAMAGE-REPAIR/TOLERATION P...		Potri.011G098100 [exp]	3.46	0.8891	DRT111.1
AT5G40340			Tudor/PWWP/MBT superfamily pro...		Potri.004G130600 [exp]	4.00	0.8909
					Potri.009G040500 [exp]	4.24	0.8946
AT3G08020			PHD finger family protein (.1)		Potri.001G264800 [exp]	6.00	0.8668
AT4G21670		FRY2, FLP1, ATC...	FIERY 2, C-terminal domain pho...		Potri.011G049400 [exp]	7.74	0.8899
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.001G469500 [exp]	7.93	0.8890	Pt-VCS.1
AT2G27350		OTLD1	otubain-like deubiquitinase 1,...		Potri.004G196800 [exp]	8.00	0.8700

Compare expression of checked genes

Potri.008G002600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.