Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08560 616 / 0 transducin family protein / WD-40 repeat family protein (.1.2) AT5G43920 397 / 4e-133 transducin family protein / WD-40 repeat family protein (.1) AT4G02730 120 / 4e-30 AtWDR5b human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) AT3G49660 110 / 2e-26 AtWDR5a human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) AT2G43770 100 / 1e-22 Transducin/WD40 repeat-like superfamily protein (.1) AT1G10580 88 / 4e-18 Transducin/WD40 repeat-like superfamily protein (.1) AT5G64730 81 / 2e-16 Transducin/WD40 repeat-like superfamily protein (.1) AT5G56130 74 / 2e-14 THO3, AtTEX1 Transducin/WD40 repeat-like superfamily protein (.1) AT1G52730 73 / 7e-14 Transducin/WD40 repeat-like superfamily protein (.1.2) AT5G25150 74 / 9e-14 TAF5 TBP-associated factor 5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G055800 [exp] 594 / 0 AT5G08560 716 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.005G206600 [exp] 590 / 0 AT5G08560 736 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Potri.010G254300 [exp] 579 / 0 AT5G08560 502 / 6e-174 transducin family protein / WD-40 repeat family protein (.1.2) Potri.014G194100 [exp] 390 / 8e-131 AT5G43920 697 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Potri.002G051900 [exp] 117 / 5e-29 AT4G02730 524 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Potri.005G148500 [exp] 116 / 1e-28 AT3G49660 503 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.007G009500 [exp] 102 / 9e-24 AT3G49660 469 / 4e-168 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Potri.019G096900 [exp] 100 / 9e-23 AT2G43770 645 / 0.0 Transducin/WD40 repeat-like superfamily protein (.1) Potri.001G306500 [exp] 90 / 1e-19 AT5G64730 489 / 2e-176 Transducin/WD40 repeat-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001046 [exp] 567 / 0 AT5G08560 713 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001411 [exp] 566 / 0 AT5G08560 695 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001045 [exp] 537 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10001410 [exp] 537 / 0 AT5G08560 694 / 0.0 transducin family protein / WD-40 repeat family protein (.1.2) Lus10011916 [exp] 301 / 4e-96 AT5G43920 557 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10022847 [exp] 298 / 3e-95 AT5G43920 550 / 0.0 transducin family protein / WD-40 repeat family protein (.1) Lus10003487 [exp] 119 / 1e-29 AT3G49660 489 / 6e-176 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1) Lus10006916 [exp] 118 / 2e-29 AT4G02730 506 / 0.0 human WDR5 \(WD40 repeat\) homolog b, Transducin/WD40 repeat-like superfamily protein (.1) Lus10001412 [exp] 116 / 2e-29 AT5G08560 176 / 1e-51 transducin family protein / WD-40 repeat family protein (.1.2) Lus10039636 [exp] 116 / 9e-29 AT3G49660 502 / 0.0 human WDR5 \(WD40 repeat\) homolog a, Transducin/WD40 repeat-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [poplar] [flax] Beta_propeller PF00400 [poplar] [flax] WD40 WD domain, G-beta repeat
Representative CDS sequence Show only first row Show all	>Potri.008G002700.1 pacid=42807613 polypeptide=Potri.008G002700.1.p locus=Potri.008G002700 ID=Potri.008G002700.1.v4.1 annot-version=v4.1 ATGGCTCAGTCTCTTACCTCCCAAAGGGATGTGGAGACAGTTGGCTCAAAAGGAGTCATAAAAAGAAATGAATACGTCAGAATCATAACAAGGGCACTGT ACTCACTCAATTATAATATGACTGCAGACCTTTTGCAGGAAGAATCAAGAATACCATTGGACTCCTCAGAGGTTAAATTGCTTCAGAAGCAAGTGTTGGA TGGGAACTGGGAAGAAAGTGTGAAAACGTTGTGTACAATCAGTCTTCTGGACAAAGCAACTCGGTCCCTGGCATCATTCTTGATATTGGAGCAGAAGTTC CTCAAATTTCTGAGAATGGATAACAATGTGCTTGATGCCTTAAATGTTCTGAGGAAAGAAATCGTGCCTCTTGGAATCAATTTGAACCGTGTTCATGAGC TTGCTTCCTGGATCATCTCTCCTTCAGGGTATCGAAATACTGATCAGGACACCGAGAGTGCAAAGTCAGAGATTCTGAAGAAACTGCTGAACTTGCTTCC CCCTTCACTCGTGATTCCTCCAACAAGGTTAGAAAGTATTGTTGAGGAGGCTCTTGATCTGCAACGTGGTGCTTGCCTGTTTCACAATGTTTTTGATAGT GATCTCTCTTTGTACCCTGATCATCAGTGCGGAAGAGGTCGGCTTCCTTCTTCAATAAAGCAGATTCTGCAAGTGCACACTGATGAAGTTTGGTTTCTGC AATTTTCACATGACGGAAAGTATTTGGCATCATCATCCAAGGATCAGTCAGCAATCATATGGCAGGTTATGGATGGAGGTAAAGCGTCATGGAAGCATAC ACTCATAGGTCACCAGAAACCAGTTTTGACAGTTTCATGGAGCCCTGATGATAACCAGCTACTTACCTGTGGCGAAGATGAGGTTATCAGACGATGGGAT GCCAATTTGGGACAATGCCTCCATGTTTACGAAAAAATTGGTGTCGGTTTCATTTCCTGTGCATGGTCCCCTGACGGTAGGGTTATACTTGCCGGTATGA CTAACAAGAGCTTTAGCCTGTGGGATGTCAATGGAGCGGAGCTGGACTGTTGGGAAGAGAATACACTCAGGATATCTGAGATGGCCATAACTGATGCGAG GGATATGATAGTAAGCATATGCAGAGGTGATACAATAGTATTCCTTGACTGGGAAGAGAAAAGATGTCGGAAACTGATTCAGGAAGAGGAAGTGATTACT TCGTTCTCGTTGTCAAAAGACAACAAATTCCTTCTAGTTAATCTTACAAACCAAGAAATCCATCTGTGGAGCTTAGAGGGTTATCCCCAGGTTGTGGCCA GGTATAAGGGTCACACACGCTCACGGTTTATCATCAGATCTTGTTTTGGTGGATGTGAAGAAGCATTTATCGCAAGTGGCAGTGAGGATGCTCAGGTGTA TGTATGGCACAGAGGGTCAGGGAAACTAATTCAGGCACTGGATGGGCATTCTGGAGCTGTGAACTGTGTGAGCTGGAACCCGGTAAATATTTACATGCTG GCCTCAGCTAGCGATGATGGAGCAATTCGAATATGGGGTCCAGATCCCAGGATGGACCAATATGGTCTGGGTTTTAAATCATGCACATGA
AA sequence Show only first row Show all	>Potri.008G002700.1 pacid=42807613 polypeptide=Potri.008G002700.1.p locus=Potri.008G002700 ID=Potri.008G002700.1.v4.1 annot-version=v4.1 MAQSLTSQRDVETVGSKGVIKRNEYVRIITRALYSLNYNMTADLLQEESRIPLDSSEVKLLQKQVLDGNWEESVKTLCTISLLDKATRSLASFLILEQKF LKFLRMDNNVLDALNVLRKEIVPLGINLNRVHELASWIISPSGYRNTDQDTESAKSEILKKLLNLLPPSLVIPPTRLESIVEEALDLQRGACLFHNVFDS DLSLYPDHQCGRGRLPSSIKQILQVHTDEVWFLQFSHDGKYLASSSKDQSAIIWQVMDGGKASWKHTLIGHQKPVLTVSWSPDDNQLLTCGEDEVIRRWD ANLGQCLHVYEKIGVGFISCAWSPDGRVILAGMTNKSFSLWDVNGAELDCWEENTLRISEMAITDARDMIVSICRGDTIVFLDWEEKRCRKLIQEEEVIT SFSLSKDNKFLLVNLTNQEIHLWSLEGYPQVVARYKGHTRSRFIIRSCFGGCEEAFIASGSEDAQVYVWHRGSGKLIQALDGHSGAVNCVSWNPVNIYML ASASDDGAIRIWGPDPRMDQYGLGFKSCT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08560			transducin family protein / WD...		Potri.008G002700 [exp]	0	1
					Potri.009G163001 [exp]	3.87	0.8128
AT2G34930			disease resistance family prot...		Potri.015G024500 [exp]	6.48	0.8553
					Potri.018G035750 [exp]	7.14	0.7812
AT5G47400			unknown protein		Potri.001G155800 [exp]	9.16	0.7903
AT3G18270		CYP77A5P	"cytochrome P450, family 77, s...		Potri.015G044400 [exp]	11.61	0.7696
AT5G62960			unknown protein		Potri.015G078200 [exp]	13.19	0.7694
AT5G46550			DNA-binding bromodomain-contai...		Potri.001G355300 [exp]	17.43	0.7876
AT1G05120			Helicase protein with RING/U-b...		Potri.014G154600 [exp]	17.54	0.7998
AT2G46540			unknown protein		Potri.014G100250 [exp]	18.43	0.7025
AT5G63520			unknown protein		Potri.015G098800 [exp]	19.07	0.7715

Compare expression of checked genes

Potri.008G002700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.