Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23390 729 / 0 Plant protein of unknown function (DUF639) (.1) AT1G48840 499 / 3e-168 Plant protein of unknown function (DUF639) (.1) AT3G18350 447 / 1e-147 Plant protein of unknown function (DUF639) (.1) AT2G21720 289 / 6e-87 Plant protein of unknown function (DUF639) (.1) AT1G71240 184 / 8e-49 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G055800 [exp] 502 / 3e-169 AT1G48840 894 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.015G046500 [exp] 494 / 4e-166 AT1G48840 942 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.013G062700 [exp] 293 / 2e-88 AT2G21720 839 / 0.0 Plant protein of unknown function (DUF639) (.1) Potri.001G210200 [exp] 167 / 4e-43 AT1G71240 968 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010155 [exp] 743 / 0 AT5G23390 781 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10013865 [exp] 482 / 2e-161 AT3G18350 897 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10026581 [exp] 471 / 2e-156 AT1G48840 870 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10020973 [exp] 444 / 9e-147 AT1G48840 899 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10010668 [exp] 276 / 2e-82 AT2G21720 775 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10007431 [exp] 269 / 9e-80 AT2G21720 767 / 0.0 Plant protein of unknown function (DUF639) (.1) Lus10002408 [exp] 176 / 8e-46 AT1G71240 941 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10027905 [exp] 164 / 1e-41 AT1G71240 806 / 0.0 Plant protein of unknown function (DUF639) (.1), Plant protein of unknown function (DUF639) (.2) Lus10017360 [exp] 53 / 9e-09 AT1G48840 47 / 1e-07 Plant protein of unknown function (DUF639) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [poplar] [flax] Peroxisome PF04842 [poplar] [flax] DUF639 Plant protein of unknown function (DUF639)
Representative CDS sequence Show only first row Show all	>Potri.008G003000.1 pacid=42808872 polypeptide=Potri.008G003000.1.p locus=Potri.008G003000 ID=Potri.008G003000.1.v4.1 annot-version=v4.1 ATGGAGACGATGATGAAGAACTTCATGAAAAGCCATCAAACCCTCTTTCACCCAACCAAATCCTCTAATACAAATAATAAAAATAATTATCAATACGACG GCGACGGCGACGGCGACGGCGACGATTCAACCATTCCCCACCTCTCTCCTCTCGCTCATTCCGTACTCTCTCGCTCTTCCAAAATCCTTGCAGTCTCAGT GCAAGAGCTACAGCGTCGTTTTGATGTTGAGCATGAGGCTGATAGTCAGCAACTGGTCAAACATACAAGGATTTTCCTTGAGTTTTGTTGCTATCGAGCT CTCCATCATATTATCACAACCCGTTCTGATTATTTGAGTGACAAGGACTTCCGTCGCTTCACCTATGACATGATGCTTGCTTGGGACTCGCCTACTCGTG CCCTTCCCGTTAACGATTCACTACAGAATGAAACCAGCATCTCTTCCGGTGAACGACAAGAGGAGGATGAGGATGGCTGGTCCCTTTTTTACTCCACTAC CACTAGTATGGCTGTTCAGGTTGATGACACAACAACTGTTGGCCGAGAGGCTTTTGCCCGTATTGCTCCTGCCTGTCCTGCTGTTGCTGACGTAATAACC GTCCACAATCTTTTTGATTCGCTCACTACCTCCTCAGACAGCAGACTTCACTTTCTCATTTATGATAAATACCTTCGCAGCCTTGACAAGATTATTAGGA GCGCAAAGAACACACCAGGACCCTTGATTTCCAACCATCAGCTTGCTGAAGGAGAGATCATCCTTGATGTTGACGGTACAGTTCCCATTCAACCTGTTCT ACAGCATATTGGAATCTCAGCATGGCCAGGCCGATTGACACTGACTAATCATGCTATCTACTTTGAGTCATTGGGAGTTGGTTTATATGATAAAGCTGTT AGATATGATCTGGCATCTGATATGAAGCAGGTCATAAAACCTGAATTAACCGGACCGTTGGGTGCTCGTCTCTTTGATAAAGCTGTGATGTACAAATCAA CATCTGTAGCAGAGCCTGTTTATTTTGAGTTTCCTGAATTCAAAGGCAATTCTCGACGGGACTATTGGTTGGATGTGTGTCTTGAGATCCTGCATGCGCA CAGATTCATTCAAAGAAACAACTTCAATGAGACTCAGCGGTTGGAGGTACTTGCAAGGGCTATCCTGGGCATCTTTCGATGTCGCGCAGTTAGAGAAGCT CTCTGCTGCTTTTCATCTCATTACAAAACCTTGCTTGCTTTTAAACTGGCTGAAAGTCTTCCCCGGGGAGATATGATCTTGGAAACTCTGTCCAGTCGCC TGGCACTTCTGAATGCAACTCCTGTTAGTGGATCCCCACATGCAAAACAGCAATTGAGACTTTCACCGGTTGCACTTCTGACACTTTGCCAACTTGGATT TATCTTACAAAAAGAAGCAAATCTAGATGTAGAAGTTATAGCATTTGGGGATCTTTGGGCTGGTGAGACAAATCCTTTGGAAATATCTGTGAAACAGTCA ATGTCAGATACTGGGAAAGCTGAAGCTGCACGGGCAACAGTGGACAAAGTGAAGGTTGAAGGGATTGATACAAATGTTGCAGTAATGAAGGAATTGCTAT TCCCGGTTATAGAATCAGCTGGCCGTCTCCATCATTTGGCCTCTTGGGAAGATCCTTTCAAATCGATGGTGTTTCTGGTGTTAAGCTGCTGTGCTATTTT ATGGGGTTGGACCAGGTATATATTGCCATCCATTTTTGTGTGGTGTGCGGTTCTAATGTTGGTACGAAGTTATGTCAGCAAAAAGATGCCCTTAGAAGCC TTCAGGGTTACAGCTCCCCCAAATAAAAATGCTGTAGAGCGGCTGTTGACATTGCAAGAAGCCATCACAGAAGTTGAAGGACTAACTCAGACAGCAAACA TTGTTCTTCTGAAGTTAAGAGCTATCTTGCTTGCAGTACTTCCCCAGGCCACAGAAAGGGTTGCTCTATTGCTGGTTTTCGTAGCTGCTGTGCTTGCATT TGCGTCTCTGCAGCATCTGATTCTCCTGGTATTTCTAGAAGCTTTCACAAGGGAAATGCCTTACAGAAAAGAAAGCAGTGATAGGTGGCTGAGACGATTA AGAGAATGGTGGGTCAGGATACCAGTCGCTCCTGTTCAGCTCATCAAACAGGATGACAAGAAATGGAAATGA
AA sequence Show only first row Show all	>Potri.008G003000.1 pacid=42808872 polypeptide=Potri.008G003000.1.p locus=Potri.008G003000 ID=Potri.008G003000.1.v4.1 annot-version=v4.1 METMMKNFMKSHQTLFHPTKSSNTNNKNNYQYDGDGDGDGDDSTIPHLSPLAHSVLSRSSKILAVSVQELQRRFDVEHEADSQQLVKHTRIFLEFCCYRA LHHIITTRSDYLSDKDFRRFTYDMMLAWDSPTRALPVNDSLQNETSISSGERQEEDEDGWSLFYSTTTSMAVQVDDTTTVGREAFARIAPACPAVADVIT VHNLFDSLTTSSDSRLHFLIYDKYLRSLDKIIRSAKNTPGPLISNHQLAEGEIILDVDGTVPIQPVLQHIGISAWPGRLTLTNHAIYFESLGVGLYDKAV RYDLASDMKQVIKPELTGPLGARLFDKAVMYKSTSVAEPVYFEFPEFKGNSRRDYWLDVCLEILHAHRFIQRNNFNETQRLEVLARAILGIFRCRAVREA LCCFSSHYKTLLAFKLAESLPRGDMILETLSSRLALLNATPVSGSPHAKQQLRLSPVALLTLCQLGFILQKEANLDVEVIAFGDLWAGETNPLEISVKQS MSDTGKAEAARATVDKVKVEGIDTNVAVMKELLFPVIESAGRLHHLASWEDPFKSMVFLVLSCCAILWGWTRYILPSIFVWCAVLMLVRSYVSKKMPLEA FRVTAPPNKNAVERLLTLQEAITEVEGLTQTANIVLLKLRAILLAVLPQATERVALLLVFVAAVLAFASLQHLILLVFLEAFTREMPYRKESSDRWLRRL REWWVRIPVAPVQLIKQDDKKWK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23390			Plant protein of unknown funct...		Potri.008G003000 [exp]	0	1
AT3G62330			Zinc knuckle (CCHC-type) famil...		Potri.014G118100 [exp]	9.27	0.8013
AT3G54350	FHA	EMB1967	embryo defective 1967, Forkhea...		Potri.005G234300 [exp]	16.43	0.7587
AT2G24030			zinc ion binding;nucleic acid ...		Potri.006G182601 [exp]	19.44	0.7347
AT3G23280		XBAT35	XB3 ortholog 5 in Arabidopsis ...		Potri.005G225300 [exp]	21.67	0.7471
AT3G21400			unknown protein		Potri.010G024000 [exp]	22.75	0.7031
AT5G01260			Carbohydrate-binding-like fold...		Potri.009G044800 [exp]	24.24	0.7510
AT4G21660			proline-rich spliceosome-assoc...		Potri.011G047600 [exp]	28.98	0.7002
AT5G63320		NPX1	nuclear protein X1 (.1.2.3)		Potri.015G091800 [exp]	33.40	0.7447
AT1G02420			Pentatricopeptide repeat (PPR)...		Potri.007G079400 [exp]	41.66	0.7379
AT4G23840			Leucine-rich repeat (LRR) fami...		Potri.001G092000 [exp]	47.71	0.7313

Compare expression of checked genes

Potri.008G003000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.