Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G08535 107 / 4e-31 D111/G-patch domain-containing protein (.1.2) AT3G52350 101 / 7e-28 D111/G-patch domain-containing protein (.1) AT5G26610 51 / 2e-08 D111/G-patch domain-containing protein (.1.2.3) AT3G57910 47 / 6e-07 D111/G-patch domain-containing protein (.1) AT3G54230 46 / 1e-06 SUA suppressor of abi3-5 (.1.2) AT3G52120 45 / 4e-06 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G002700 [exp] 52 / 2e-08 AT5G26610 294 / 1e-99 D111/G-patch domain-containing protein (.1.2.3) Potri.013G002100 [exp] 51 / 2e-08 AT5G26610 289 / 1e-97 D111/G-patch domain-containing protein (.1.2.3) Potri.004G081800 [exp] 46 / 2e-06 AT3G54230 855 / 0.0 suppressor of abi3-5 (.1.2) Potri.016G048600 [exp] 45 / 4e-06 AT3G57910 215 / 1e-69 D111/G-patch domain-containing protein (.1) Potri.009G064600 [exp] 41 / 7e-05 AT3G52120 509 / 1e-179 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Potri.001G269900 [exp] 41 / 9e-05 AT3G52120 500 / 3e-176 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031446 [exp] 53 / 6e-09 AT5G26610 357 / 1e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10001513 [exp] 51 / 3e-08 AT5G26610 356 / 6e-124 D111/G-patch domain-containing protein (.1.2.3) Lus10010955 [exp] 47 / 6e-07 AT3G54230 943 / 0.0 suppressor of abi3-5 (.1.2) Lus10031369 [exp] 45 / 7e-06 AT3G54230 812 / 0.0 suppressor of abi3-5 (.1.2) Lus10021033 [exp] 44 / 1e-05 AT3G57910 269 / 4e-90 D111/G-patch domain-containing protein (.1) Lus10023819 [exp] 44 / 1e-05 AT3G57910 273 / 1e-91 D111/G-patch domain-containing protein (.1) Lus10015703 [exp] 42 / 5e-05 AT3G52120 477 / 2e-166 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2) Lus10037485 [exp] 42 / 5e-05 AT3G52120 457 / 3e-158 SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.1), SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0449 [poplar] [flax] G-PATCH PF01585 [poplar] [flax] G-patch G-patch domain
Representative CDS sequence Show only first row Show all	>Potri.008G003100.1 pacid=42808800 polypeptide=Potri.008G003100.1.p locus=Potri.008G003100 ID=Potri.008G003100.1.v4.1 annot-version=v4.1 ATGGGAGATCAATTTAGGGGTTCAACAACAGCCATTGATTCCTCTAACATTGGCTTTCAGCTCTTGAAGAAGCACGGGTGGAAGGAAGGAACTGGCCTTG GGATTTCTGAGCAGGGGAGATTGGAGCCTGTGCAAACATATTTGAAGAATAACAAGCGTGGACTTGGGGCTGATCATAATAAGAAATTACTTGTGAAGAA GAATAACACGACCGAGTCTTCTTCTGCCCCAGCTTCTTCTTCTTCTTCCTCCAAGGACAAAACCAACCAGGATCGCTCTTCTTCAAGGAAATCCAAGGCA CTGTCTAAGAAACAAAGGAAGATGCAGGAGCTGGAGAAGCGTTTACAGGATAAGGAATTTGAGCGGGGTTTTTTTCGCGAGTTTTGGCCTGATAATGTTT GA
AA sequence Show only first row Show all	>Potri.008G003100.1 pacid=42808800 polypeptide=Potri.008G003100.1.p locus=Potri.008G003100 ID=Potri.008G003100.1.v4.1 annot-version=v4.1 MGDQFRGSTTAIDSSNIGFQLLKKHGWKEGTGLGISEQGRLEPVQTYLKNNKRGLGADHNKKLLVKKNNTTESSSAPASSSSSSKDKTNQDRSSSRKSKA LSKKQRKMQELEKRLQDKEFERGFFREFWPDNV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G08535			D111/G-patch domain-containing...		Potri.008G003100 [exp]	0	1
AT1G03290			unknown protein		Potri.014G139000 [exp]	1.41	0.9095
AT3G09180			unknown protein		Potri.016G070700 [exp]	2.64	0.8667
AT1G06620			2-oxoglutarate (2OG) and Fe(II...		Potri.013G045000 [exp]	9.48	0.8617
AT3G58030			RING/U-box superfamily protein...		Potri.006G193600 [exp]	9.59	0.8765
AT5G11970			Protein of unknown function (D...		Potri.003G043600 [exp]	11.95	0.8563
AT3G06780			glycine-rich protein (.1)		Potri.008G211000 [exp]	12.96	0.8574
AT4G27540		PRA1.H	prenylated RAB acceptor 1.H (....		Potri.011G116200 [exp]	13.19	0.8759
AT2G44200			CBF1-interacting co-repressor ...		Potri.006G000200 [exp]	14.69	0.8673
AT1G36370		SHM7	serine hydroxymethyltransferas...		Potri.002G090200 [exp]	17.86	0.8597	SHMT4
AT3G05700			Drought-responsive family prot...		Potri.014G125500 [exp]	18.70	0.8352

Compare expression of checked genes

Potri.008G003100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.