Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ATFYPP3.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50370 625 / 0 AtFYPP1 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT3G19980 624 / 0 STPP, ATFYPP3, EMB2736 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) AT4G26720 409 / 1e-144 PPX-1, EP129, EP124, PPX1 PROTEIN PHOSPHATASE X-1, protein phosphatase X 1 (.1) AT5G55260 402 / 5e-142 EP128, PPX-2, PPX2 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) AT1G69960 374 / 1e-130 PP2A serine/threonine protein phosphatase 2A (.1) AT1G10430 372 / 4e-130 PP2A-2 protein phosphatase 2A-2 (.1) AT3G58500 370 / 2e-129 PP2A-4, EP7, PP2A-3 protein phosphatase 2A-4 (.1) AT2G42500 370 / 4e-129 PP2A-3, PP2A-4 protein phosphatase 2A-3 (.1.2.3) AT1G59830 369 / 5e-129 PP2A-1 protein phosphatase 2A-2 (.1.2) AT2G29400 278 / 7e-93 PP1-AT, TOPP1 type one protein phosphatase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254500 [exp] 628 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.011G092200 [exp] 397 / 4e-140 AT5G55260 613 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.001G358700 [exp] 397 / 8e-140 AT5G55260 609 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Potri.015G068300 [exp] 376 / 1e-131 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Potri.012G073300 [exp] 374 / 7e-131 AT1G10430 605 / 0.0 protein phosphatase 2A-2 (.1) Potri.003G217900 [exp] 369 / 7e-129 AT2G42500 627 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.001G007800 [exp] 369 / 1e-128 AT2G42500 628 / 0.0 protein phosphatase 2A-3 (.1.2.3) Potri.008G191600 [exp] 369 / 1e-128 AT1G10430 610 / 0.0 protein phosphatase 2A-2 (.1) Potri.010G039700 [exp] 367 / 7e-128 AT1G10430 609 / 0.0 protein phosphatase 2A-2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10013456 [exp] 630 / 0 AT3G19980 623 / 0.0 SERINE/THREONINE PROTEIN PHOSPHATASE, EMBRYO DEFECTIVE 2736, "flower-specific, phytochrome-associated protein phosphatase 3", flower-specific, phytochrome-associated protein phosphatase 3 (.1) Lus10010156 [exp] 627 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10017361 [exp] 627 / 0 AT1G50370 617 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10041015 [exp] 577 / 0 AT1G50370 570 / 0.0 flower- specific, phytochrome-associated protein phosphatase 1, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10016576 [exp] 407 / 8e-143 AT5G55260 615 / 0.0 PROTEIN PHOSPHATASE X -2, protein phosphatase X 2 (.1) Lus10033122 [exp] 373 / 2e-130 AT1G10430 606 / 0.0 protein phosphatase 2A-2 (.1) Lus10042160 [exp] 375 / 3e-130 AT1G10430 611 / 0.0 protein phosphatase 2A-2 (.1) Lus10013287 [exp] 372 / 6e-130 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10030810 [exp] 372 / 6e-130 AT1G10430 617 / 0.0 protein phosphatase 2A-2 (.1) Lus10039185 [exp] 367 / 7e-128 AT2G42500 624 / 0.0 protein phosphatase 2A-3 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [poplar] [flax] Calcineurin PF00149 [poplar] [flax] Metallophos Calcineurin-like phosphoesterase
Representative CDS sequence Show only first row Show all	>Potri.008G003200.1 pacid=42807843 polypeptide=Potri.008G003200.1.p locus=Potri.008G003200 ID=Potri.008G003200.1.v4.1 annot-version=v4.1 ATGGATTTGGATCAATGGATAGCGAAGGTTAAAGAAGGACAGCATCTTTTGGAAGACGAGCTCCAGCTTCTCTGCGAATACGTAAAAGAGATCCTCATTG AGGAGTCCAATGTGCAGCCCGTTAACAGCCCTGTCACTGTCTGTGGTGATATTCATGGCCAGTTTCATGATCTTATGAAACTTTTCCAGACTGGGGGTCA TGTACCCGAGACTAATTACATTTTTATGGGCGATTTTGTTGATCGAGGTTATAATAGTCTTGAAGTATTCACTATTCTTTTGCTTCTCAAAGCAAGATAC CCAGCTAATATTACACTTTTGCGTGGAAATCATGAAAGCAGGCAACTAACTCAGGTATATGGTTTCTATGATGAGTGCCAGAGGAAGTATGGGAATGCCA ATGCATGGCGGTATTGTACTGATGTTTTTGATTATCTGACACTATCAGCAATTATAGATGGCACTGTGCTTTGCGTCCATGGTGGTCTTTCTCCTGACAT CCGAACTATCGATCAGATAAGAGTAATTGAACGGAATTGTGAGATTCCACATGAAGGGCCATTCTGTGATCTCATGTGGAGTGATCCTGAAGATATAGAG ACATGGGCAGTTAGCCCCCGAGGAGCAGGTTGGCTTTTTGGGTCTAGGGTCACTTCTGAGTTCAATCACATTAACAATCTTGATCTGGTATGTCGAGCGC ACCAACTTGTACAAGAAGGTCTCAAGTACATGTTTCAAGATAAAGGCTTAGTCACTGTCTGGTCTGCACCAAATTACTGTTACCGTTGTGGAAATGTAGC TTCTATATTGAGCTTCAATGAGAATATGGAGAGGGAAGTGAAGTTTTTTACAGAAACGGAGGAAAACAACCAGATGAGAGGGCCCAGGACAGGAGTTCCA TATTTCTTATGA
AA sequence Show only first row Show all	>Potri.008G003200.1 pacid=42807843 polypeptide=Potri.008G003200.1.p locus=Potri.008G003200 ID=Potri.008G003200.1.v4.1 annot-version=v4.1 MDLDQWIAKVKEGQHLLEDELQLLCEYVKEILIEESNVQPVNSPVTVCGDIHGQFHDLMKLFQTGGHVPETNYIFMGDFVDRGYNSLEVFTILLLLKARY PANITLLRGNHESRQLTQVYGFYDECQRKYGNANAWRYCTDVFDYLTLSAIIDGTVLCVHGGLSPDIRTIDQIRVIERNCEIPHEGPFCDLMWSDPEDIE TWAVSPRGAGWLFGSRVTSEFNHINNLDLVCRAHQLVQEGLKYMFQDKGLVTVWSAPNYCYRCGNVASILSFNENMEREVKFFTETEENNQMRGPRTGVP YFL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50370		AtFYPP1	flower- specific, phytochrome-...		Potri.008G003200 [exp]	0	1	ATFYPP3.2
AT5G06660			Protein of unknown function DU...		Potri.016G060300 [exp]	2.00	0.7912
AT3G02420			unknown protein		Potri.017G110600 [exp]	2.44	0.7868
AT5G57020		ATNMT1, NMT1	ARABIDOPSIS THALIANA MYRISTOYL...		Potri.006G147500 [exp]	3.46	0.7120	Pt-NMT1.6
AT1G34760		RHS5, GF14OMICR...	ROOT HAIR SPECIFIC 5, general ...		Potri.005G164500 [exp]	4.47	0.7485
AT3G02090		MPPBETA	Insulinase (Peptidase family M...		Potri.004G118900 [exp]	7.07	0.7124
AT1G76390		PUB43	plant U-box 43, ARM repeat sup...		Potri.005G253400 [exp]	7.48	0.7257
AT4G17650			Polyketide cyclase / dehydrase...		Potri.002G126000 [exp]	7.74	0.7319
AT3G12160		AtRABA4d	ARABIDOPSIS THALIANA RAB GTPAS...		Potri.001G270100 [exp]	8.06	0.7118	RAB11.15
AT4G27000		ATRBP45C	RNA-binding (RRM/RBD/RNP motif...		Potri.001G423400 [exp]	9.16	0.7065
AT1G22920		CSN5A, JAB1, AJ...	ARABIDOPSIS JAB1 HOMOLOG 1, CO...		Potri.018G006100 [exp]	10.48	0.7121	AJH1.3

Compare expression of checked genes

Potri.008G003200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.