Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G25940 535 / 0 ALPHAVPE, ALPHA-VPE alpha-vacuolar processing enzyme (.1) AT4G32940 516 / 3e-180 GAMMAVPE, GAMMA-VPE gamma vacuolar processing enzyme (.1) AT3G20210 485 / 2e-168 DELTAVPE, DELTA-VPE delta vacuolar processing enzyme (.1.2) AT1G62710 471 / 9e-163 BETAVPE, BETA-VPE beta vacuolar processing enzyme (.1) AT1G08750 93 / 3e-20 Peptidase C13 family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G232900 [exp] 547 / 0 AT4G32940 742 / 0.0 gamma vacuolar processing enzyme (.1) Potri.018G059400 [exp] 540 / 0 AT4G32940 752 / 0.0 gamma vacuolar processing enzyme (.1) Potri.003G113300 [exp] 484 / 9e-168 AT1G62710 704 / 0.0 beta vacuolar processing enzyme (.1) Potri.001G119800 [exp] 474 / 1e-163 AT1G62710 720 / 0.0 beta vacuolar processing enzyme (.1) Potri.019G014000 [exp] 94 / 1e-20 AT1G08750 608 / 0.0 Peptidase C13 family (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007450 [exp] 558 / 0 AT4G32940 754 / 0.0 gamma vacuolar processing enzyme (.1) Lus10033344 [exp] 530 / 0 AT2G25940 473 / 3e-164 alpha-vacuolar processing enzyme (.1) Lus10024446 [exp] 522 / 0 AT4G32940 717 / 0.0 gamma vacuolar processing enzyme (.1) Lus10024599 [exp] 474 / 1e-163 AT1G62710 709 / 0.0 beta vacuolar processing enzyme (.1) Lus10032236 [exp] 468 / 3e-161 AT1G62710 712 / 0.0 beta vacuolar processing enzyme (.1) Lus10034798 [exp] 303 / 1e-99 AT2G25940 260 / 9e-84 alpha-vacuolar processing enzyme (.1) Lus10034797 [exp] 116 / 2e-31 AT3G20210 104 / 4e-28 delta vacuolar processing enzyme (.1.2) Lus10006570 [exp] 97 / 2e-21 AT1G08750 578 / 0.0 Peptidase C13 family (.1.2.3) Lus10005520 [exp] 96 / 5e-21 AT1G08750 582 / 0.0 Peptidase C13 family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0093 [poplar] [flax] Peptidase_CD PF01650 [poplar] [flax] Peptidase_C13 Peptidase C13 family
Representative CDS sequence Show only first row Show all	>Potri.008G003400.2 pacid=42807323 polypeptide=Potri.008G003400.2.p locus=Potri.008G003400 ID=Potri.008G003400.2.v4.1 annot-version=v4.1 ATGTTGAGTCCTGGAAGTTGGAACCTCTCTGTATATTGCATGCCCCTATATTCTAATTTCTTTCTAGTCGTCAGAAAGCTGGTTGATTACTTGAATTGCA GTATGAGCAGCAGCTCCTATCTGTGTGGCTATGGCTATGGCACATTTCTTTTCCTAATCGCATTGTTAAGTTCCATAGCTCAAAGTCAGGGAGTGATCAT CAACAGTACTAGTGCGTCAAGCTTGCCATCGAGTGTTAGAAGAGACTCCACTACCGCTGAAGGAAAACAATGGGCCGTTTTGGTTGCCGGATCGGCTGGT TATGAAAATTACAGGCATCAGGCTGATGTATGCCATGCATACCAAATACTGAAGAAAGGTGGGTTGAAAGATGAAAACATCATTGTTTTCATGTATGATG ACATTGCGTTCCATGTTGATAATCCCAGGCCCGGCATCATCATCAACAAACCTTTTGGTCATGATGTTTATGCAGGAGTCCCCAAGGATTATACTGGAGA TAACTGTACAGTGGACAACTTATTTGCTGTACTTCTGGGAAACAAATCTGCTCTTACTGGAGGGAGTGGCAAGGTTGTGGATAGTGGTCCAAATGACAAC ATTTTCATATACTATGCTGATCATGGTGCTCCAGGTTTAGTCGGTATGCCTATTGGGAAAGACCTGTATGCCAAAGACCTCATACAAGTGTTGAAGAAGC AGCAGGAAGCTAATTCGTATAAAAGCATGGTATTCTACCTTGAAGCTTGTGAGTCTGGGAGTATGTTCGAAGGTCTTCTTCCAAGTAACTGGAGCATATA TGCAATTACTGCTGCAAATGGAGAGGAGAGTAGCTATGGAATATATTGCCCAGGATACTACCCTGCTCCTCCCCCAGAATTTCTTACTTGCTTGGGAGAT GTATTTAGCATTTCTTGGATGGAGGATAGTGATTTGCACGACATGAGCCAGGAAACTCTGCAGCAGCAATATGAAGTGGTTCGGAGAAGGACAGGATTTG ATTATGAAGATAGGTCTCATGTCATGCAATATGGAAACATGGAGCTTAGTAAGGAGCTGCTCTCTTCTTACTTGGGCACAAACGCTGCAAACGATAACTA CGCTACCAACATTAATATCGAAGAATACCCTTCTATGATCCCAAGAGCTTTTGACCAACGCGAAGCAACTCTTCTTCATTTCTGGCACAAGTATCAAGAA GCCCCCGATGGATCTGATAAGAAGGCCGAGGCTCACAAGGACCTACTTCGCATACATTCTCATATAAGGCATGTGGATCGTAGCCTAAGCCATATTGCTT CAACTCTGTTTGGGGATGAAAACGCAGCAAATGCAATGAAGCATGTTAGACCTTCTGGGCAACCTCTTGTTGATGACTGGGATTGCTTGAAGGGCCTTGT GGAAGCTTATGAGAAACAGTGTGGAGGTCTGTCATGGTATGGAAAGAAGTACACGAGAGTGATAGCAAACATGTGCAATGCTGGGATAAATGTGGAGCAA ATGATCGGTGCATCCACCAGAGCATGCTCATCAAGGACCACCACCACCACTCCTACTAGAGGCTCCCTTCAAAACGAATTTGACAAATAG
AA sequence Show only first row Show all	>Potri.008G003400.2 pacid=42807323 polypeptide=Potri.008G003400.2.p locus=Potri.008G003400 ID=Potri.008G003400.2.v4.1 annot-version=v4.1 MLSPGSWNLSVYCMPLYSNFFLVVRKLVDYLNCSMSSSSYLCGYGYGTFLFLIALLSSIAQSQGVIINSTSASSLPSSVRRDSTTAEGKQWAVLVAGSAG YENYRHQADVCHAYQILKKGGLKDENIIVFMYDDIAFHVDNPRPGIIINKPFGHDVYAGVPKDYTGDNCTVDNLFAVLLGNKSALTGGSGKVVDSGPNDN IFIYYADHGAPGLVGMPIGKDLYAKDLIQVLKKQQEANSYKSMVFYLEACESGSMFEGLLPSNWSIYAITAANGEESSYGIYCPGYYPAPPPEFLTCLGD VFSISWMEDSDLHDMSQETLQQQYEVVRRRTGFDYEDRSHVMQYGNMELSKELLSSYLGTNAANDNYATNINIEEYPSMIPRAFDQREATLLHFWHKYQE APDGSDKKAEAHKDLLRIHSHIRHVDRSLSHIASTLFGDENAANAMKHVRPSGQPLVDDWDCLKGLVEAYEKQCGGLSWYGKKYTRVIANMCNAGINVEQ MIGASTRACSSRTTTTTPTRGSLQNEFDK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G25940		ALPHAVPE, ALPHA...	alpha-vacuolar processing enzy...		Potri.008G003400 [exp]	0	1
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045100 [exp]	15.23	0.7879
AT1G13740		AFP2	ABI five binding protein 2 (.1...		Potri.004G120600 [exp]	15.36	0.7905
AT1G15950		IRX4, ATCCR1, C...	IRREGULAR XYLEM 4, cinnamoyl c...		Potri.001G045000 [exp]	26.83	0.7586
AT5G20885			RING/U-box superfamily protein...		Potri.018G046900 [exp]	31.30	0.7545
AT5G57690		ATDGK4	diacylglycerol kinase 4 (.1)		Potri.006G172400 [exp]	40.29	0.7670
AT3G45670			Protein kinase superfamily pro...		Potri.006G181000 [exp]	48.74	0.6948
					Potri.001G422750 [exp]	51.22	0.7443
AT5G38200			Class I glutamine amidotransfe...		Potri.010G120600 [exp]	56.49	0.7012
					Potri.014G044600 [exp]	56.54	0.6813
AT3G28917	ZF_HD	MIF2	mini zinc finger 2 (.1)		Potri.017G082701 [exp]	70.45	0.7069

Compare expression of checked genes

Potri.008G003400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.