Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16780 478 / 3e-164 AtVHP2;2, AVPL1 Inorganic H pyrophosphatase family protein (.1) AT1G78920 460 / 5e-158 AtVHP2;1, AVPL1, AVP2 vacuolar H+-pyrophosphatase 2, VACUOLAR-PYROPHOSPHATASE LIKE PROTEIN 1, vacuolar H+-pyrophosphatase 2, vacuolar H+-pyrophosphatase 2 (.1), vacuolar H+-pyrophosphatase 2 (.2) AT1G15690 147 / 5e-40 FUGU5, AtVHP1;1, AVP-3, ATAVP3, AVP1 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G254200 [exp] 502 / 2e-174 AT1G16780 1266 / 0.0 Inorganic H pyrophosphatase family protein (.1) Potri.013G009400 [exp] 153 / 6e-42 AT1G15690 1237 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.006G063000 [exp] 152 / 2e-41 AT1G15690 1336 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.005G018700 [exp] 150 / 7e-41 AT1G15690 1248 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Potri.018G119500 [exp] 148 / 4e-40 AT1G15690 1367 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034800 [exp] 483 / 5e-167 AT1G16780 1434 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10033345 [exp] 418 / 5e-141 AT1G16780 1174 / 0.0 Inorganic H pyrophosphatase family protein (.1) Lus10038114 [exp] 153 / 4e-42 AT1G15690 1170 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10038111 [exp] 153 / 8e-42 AT1G15690 1385 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10039977 [exp] 150 / 8e-41 AT1G15690 1381 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2) Lus10008828 [exp] 117 / 3e-29 AT1G15690 697 / 0.0 FUGU 5, ARABIDOPSIS THALIANA V-PPASE 3, Inorganic H pyrophosphatase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03030 [poplar] [flax] H_PPase Inorganic H+ pyrophosphatase
Representative CDS sequence Show only first row Show all	>Potri.008G003502.1 pacid=42808237 polypeptide=Potri.008G003502.1.p locus=Potri.008G003502 ID=Potri.008G003502.1.v4.1 annot-version=v4.1 ATGGTTGGGTGTGGATTCCCCTGGTTCAATGAAGTGCCTCTTATCCTTGTGGGATATGGATATGGAGCTTCATTTTTTGCACTGTTTGCTCAGTTGGGTG GTGGAATATACACAAAAGCTGCTGATGTTGGGGCTGACCTTGTTGGAAAAGTAGAGCAGGGAATACCAGAAGATGATCCTAGAAATCCTGCAGTGATTGC AGATTTGGTTGGAGATAATGTGGGTGATTGTGCTGCTCGAGGTGCTGATCTTTTCGAAAGTATTGCTGCTGAAACAATTAGTGCCATGATACTTGGGGGA ACCATGGCCCAGCGTTGCAAAATTGAGGATCCATCTGGCTACATCTTGTTTCCTCTTGTCGTTCATTCATTTGACCTGGTCATATCTTCAATTGGAATTC TTTCAATCAGGAGTACTCGTGATTCTAGTGTGAAGTCTCCCATAGAGGATCCAATGGCAATCCTTCAGAAAGGATACTCGGTTACAATATGTCTGGCAGT TCTTACATTCGCTGCGTCTACCTATTGGATGCTTTATACAGAGCAAGCACCTTCAGCATGGGTTCATTTTGCGTTATGTGGATTGGTTGGAATCATCACA GCTTATATTTTTGTCTGGATCACCAAGAACTATACTGACTACAAGCATGGTCGTGTACGCACATTGGCTCTTGCTAGCTCCACCGGTCATGGGATTAACA TAATTGCAGGAGTTAGTCTGGGGCTGGAATCAACAGCCCTTCCTGTTCTTGTCATTAGTGTATCCATAGTTTCATCTTTCTGGCTGGGTCACATTGCAGG GCTGGTTGATGAGGCTGGAAACGCCACAGGTGGGCTGTTTGGTACAGCTGTGGCCACAATGGGAATGCTCAGCACCGCATAA
AA sequence Show only first row Show all	>Potri.008G003502.1 pacid=42808237 polypeptide=Potri.008G003502.1.p locus=Potri.008G003502 ID=Potri.008G003502.1.v4.1 annot-version=v4.1 MVGCGFPWFNEVPLILVGYGYGASFFALFAQLGGGIYTKAADVGADLVGKVEQGIPEDDPRNPAVIADLVGDNVGDCAARGADLFESIAAETISAMILGG TMAQRCKIEDPSGYILFPLVVHSFDLVISSIGILSIRSTRDSSVKSPIEDPMAILQKGYSVTICLAVLTFAASTYWMLYTEQAPSAWVHFALCGLVGIIT AYIFVWITKNYTDYKHGRVRTLALASSTGHGINIIAGVSLGLESTALPVLVISVSIVSSFWLGHIAGLVDEAGNATGGLFGTAVATMGMLSTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16780		AtVHP2;2, AVPL1	Inorganic H pyrophosphatase fa...		Potri.008G003502 [exp]	0	1
AT5G66680		DGL1	DEFECTIVE GLYCOSYLATION, dolic...		Potri.004G157900 [exp]	4.24	0.9079
AT1G05910			cell division cycle protein 48...		Potri.017G031150 [exp]	10.39	0.8968
AT5G37830		OXP1	oxoprolinase 1 (.1)		Potri.017G124400 [exp]	12.80	0.8602
AT1G62440		LRX2	leucine-rich repeat/extensin 2...		Potri.018G151000 [exp]	12.84	0.8950
AT3G07330		ATCSLC6, ATCSLC...	CELLULOSE-SYNTHASE LIKE C6, Ce...		Potri.014G190701 [exp]	12.96	0.8898
AT4G22190			unknown protein		Potri.006G270100 [exp]	13.00	0.8899
AT3G61050		AtCLB, NTMCTYPE...	calcium-dependent lipid-bindin...		Potri.014G072800 [exp]	16.70	0.8704
AT1G80350		FTR, FRC2, FRA2...	KATANIN 1, FAT ROOT, FURCA2, F...		Potri.017G013601 [exp]	16.97	0.8983
AT1G78060			Glycosyl hydrolase family prot...		Potri.005G168500 [exp]	23.66	0.8441
AT5G39850			Ribosomal protein S4 (.1)		Potri.006G209900 [exp]	25.69	0.8803

Compare expression of checked genes

Potri.008G003502 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.