Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G66520 355 / 8e-115 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G29230 334 / 5e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G20540 331 / 1e-106 MEF21 mitochondrial editing factor 21 (.1) AT2G13600 335 / 4e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G56310 329 / 7e-106 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G08510 327 / 1e-105 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G40405 329 / 7e-105 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G48910 327 / 1e-103 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G06540 324 / 4e-103 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G15300 316 / 1e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G065500 [exp] 371 / 6e-121 AT5G06540 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G223900 [exp] 364 / 3e-119 AT5G56310 508 / 1e-176 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G369900 [exp] 364 / 2e-118 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G119000 [exp] 355 / 1e-114 AT5G44230 792 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G086100 [exp] 347 / 1e-112 AT5G15300 675 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G175900 [exp] 344 / 4e-112 AT5G08510 608 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G258766 [exp] 341 / 3e-110 AT1G06150 705 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Potri.005G012600 [exp] 342 / 2e-109 AT2G29760 540 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 339 / 2e-108 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10015718 [exp] 648 / 0 AT5G66520 357 / 6e-116 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10029344 [exp] 357 / 2e-115 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10020918 [exp] 352 / 1e-113 AT2G29760 474 / 3e-159 ORGANELLE TRANSCRIPT PROCESSING 81, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019797 [exp] 342 / 6e-110 AT3G29230 768 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10014113 [exp] 340 / 2e-109 AT3G29230 767 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030053 [exp] 342 / 9e-109 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10031423 [exp] 340 / 1e-108 AT5G66520 538 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010909 [exp] 340 / 2e-108 AT5G66520 537 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10039974 [exp] 332 / 1e-106 AT1G06150 612 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10008825 [exp] 329 / 2e-105 AT1G06150 614 / 0.0 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF01535 [poplar] [flax] PPR PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family CL0020 [poplar] [flax] TPR PF13812 [poplar] [flax] PPR_3 Pentatricopeptide repeat domain
Representative CDS sequence Show only first row Show all	>Potri.008G003600.3 pacid=42806834 polypeptide=Potri.008G003600.3.p locus=Potri.008G003600 ID=Potri.008G003600.3.v4.1 annot-version=v4.1 ATGCAATCTCGTTTAGAAGAAGGGGAAGAGAACAAGGTACAGATGTTAGTTGATGAAAAAGGAGTCAATATTCCCACCACCGGCACCGGCACCGACTTGA CAAGAACTTCTTCCCCTTCCACTTGTACTACTGCTACTGCTACTTGCACTACTACATCTTCGAGAGCTCTACAGCAACGCTTATTCTCTCTATTACAAAG AAAACAACAACCAACCCTTAAACATGTCACTCAGATTCATGCCCAGATTCTCATCAACGGCTTTTCCCGCACTAAAAACTTCCTTCTTGTACACCTTCTC TCCTTCTACAGCAACTCCTCTGCTCACCATCTCCTCTCTGCCCACTATGTCTTTAAAGATATTCAAAGCCCCAGCACTATCCTCTGGAACCAGATGATTA GGGCTCATGCTCGGAGCCAAACCCCTGCCAAATCTATTCAGTTCTTCAATCAAATGTTGCTCACCGATTCCCGCCCTGATGCCCACACCTATTCCTTTCT TTTGGCTGCTTGTACGTCTTCTTTGTCTTTGAGGGAGGGACAGCAGGTTCACTCCAAAGTATTGACTAATGGCTATTATTCCTCAAATGTCTTTCTCATG TCCAAGTTGGTTAATTTCTATGCTGCTGTTGTTGGTGGCGAAGGCGCTGCTCTTGCATCCGCACGCAAAGTGTTTGATGATATGTCTGAAAGAAATGTTG TCTGCTGGAATTCCATGCTCGCGGGGTATATGAGGCGTGGAAATCTTGACGGGGCAAGGAGGATTTTTTATGAGATGCCAGAGAGGAACGTCGTCTCGTG GACTACTATGATTTCAGGGTATGCGAAAAATGGCAAGTGCAAGCAGGCATTGAATTTGTTCGATCAAATGAGGAAAGCCGGAGTGGAATTGGACCAGGTG GTATTATTGGCAGCCTTGACAGCGTGTGCAGAACTGGGGGATTTAAAAATGGGGATGTGGATTCACTCGTATATCCAAGATACCTTTGTTGGGTCAAACC AGCGAGTGTTGGTTTCTTTGAACAATGCACTTATACACATGTATGCTAGCTGCGGTATGATTGATGAAGCTTATGAAGTATTTAGGTGGATGCCAGAGAG AAGTGCGGTTTCCTGGACAAGCTTGATCACTGCTTTTGCAAAACAGGGCTATGCGCAAGCAGTTCTTGAAATATTTCGCTCGATGCAAAGATTGGGCACT TCGGAAGCAAGGCCCGATGGCATAACCTTTATTGGGGTTCTCTGTGCGTGCAGTCATGCTGGACTTGTTGACGAGGGCCGTCAACTCTTCAAGGACATGA TTCAGCGTTGGGGTATTAAGCCTAGGATTGAGCACTATGGGTGCATGGTTGATTTATTGAGTCGTGCTGGTTTCTTGGATGAGGCACAAGAACTCATTGC GACCATGCCTGTAAAACCAAATAATGCTGTTTGGGGTGCTCTCCTTGGTGGTTGCAGGTTTTATCGCAATGCTGAGCTTGCTTCTCTCGTGTCTCAAAAA TTGGTTGCGGAACCTGACCCTGACAAAGCTGCTGGTTATCTTTCTCTTTTGGCACAAGTGTATGCGTCTGCTGAAAAGTGGCAGGATGTTGCTACTGTGA GACAGAAGATGGTCGCGATGGGTGTGAAAAAGCCTGCTGGTCAAAGCTGGGTTCAAATAAATGAGGTGGTTCATGATTCTGTGTCAGTTGATAAGACTCA TAAAAATACATCTTCAATTTATGAGATGCTTGGAAAAATCCACCAGGCAAGCAAAGTTGAAAGGCTATAA
AA sequence Show only first row Show all	>Potri.008G003600.3 pacid=42806834 polypeptide=Potri.008G003600.3.p locus=Potri.008G003600 ID=Potri.008G003600.3.v4.1 annot-version=v4.1 MQSRLEEGEENKVQMLVDEKGVNIPTTGTGTDLTRTSSPSTCTTATATCTTTSSRALQQRLFSLLQRKQQPTLKHVTQIHAQILINGFSRTKNFLLVHLL SFYSNSSAHHLLSAHYVFKDIQSPSTILWNQMIRAHARSQTPAKSIQFFNQMLLTDSRPDAHTYSFLLAACTSSLSLREGQQVHSKVLTNGYYSSNVFLM SKLVNFYAAVVGGEGAALASARKVFDDMSERNVVCWNSMLAGYMRRGNLDGARRIFYEMPERNVVSWTTMISGYAKNGKCKQALNLFDQMRKAGVELDQV VLLAALTACAELGDLKMGMWIHSYIQDTFVGSNQRVLVSLNNALIHMYASCGMIDEAYEVFRWMPERSAVSWTSLITAFAKQGYAQAVLEIFRSMQRLGT SEARPDGITFIGVLCACSHAGLVDEGRQLFKDMIQRWGIKPRIEHYGCMVDLLSRAGFLDEAQELIATMPVKPNNAVWGALLGGCRFYRNAELASLVSQK LVAEPDPDKAAGYLSLLAQVYASAEKWQDVATVRQKMVAMGVKKPAGQSWVQINEVVHDSVSVDKTHKNTSSIYEMLGKIHQASKVERL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G66520			Tetratricopeptide repeat (TPR)...		Potri.008G003600 [exp]	0	1
AT1G55540		EMB1011	Nuclear pore complex protein (...		Potri.003G223400 [exp]	1.00	0.9415
AT3G26850			histone-lysine N-methyltransfe...		Potri.006G227200 [exp]	1.41	0.9379
AT4G01570			Tetratricopeptide repeat (TPR)...		Potri.002G182900 [exp]	1.73	0.9348
AT1G14650			SWAP (Suppressor-of-White-APri...		Potri.007G070700 [exp]	3.16	0.9105
AT3G20730			Tetratricopeptide repeat (TPR)...		Potri.007G068900 [exp]	3.87	0.8952
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.018G146001 [exp]	4.89	0.9079
AT2G32630			Pentatricopeptide repeat (PPR-...		Potri.003G008900 [exp]	5.65	0.9157
AT5G16715		EMB2247	embryo defective 2247, ATP bin...		Potri.004G090732 [exp]	6.48	0.9071
AT4G35800		RNA_POL_II_LSRN...	RNA polymerase II large subuni...		Potri.005G107600 [exp]	8.94	0.9052	Pt-RPB1.1
AT3G13300		VCS	VARICOSE, Transducin/WD40 repe...		Potri.001G469500 [exp]	11.31	0.8944	Pt-VCS.1

Compare expression of checked genes

Potri.008G003600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.