Plant FIBer expression Database

Potri.008G003800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G78915 448 / 4e-157 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
AT4G39470 43 / 0.0003 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.016G080000
[exp]
42 / 0.0008 AT2G37400 342 / 4e-117 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034802
[exp]
464 / 8e-163 AT1G78915 440 / 2e-153 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2), Tetratricopeptide repeat (TPR)-like superfamily protein (.3)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0020 TPR PF13432 TPR_16 Tetratricopeptide repeat
Representative CDS sequence
>Potri.008G003800.2 pacid=42806785 polypeptide=Potri.008G003800.2.p locus=Potri.008G003800 ID=Potri.008G003800.2.v4.1 annot-version=v4.1
ATGGCGATAGCGGCGGCGGCGGCAGCCACAATGATCACAAGTAGCAGTAAGTTTTTGAGGTTCGGAGTTCAATGCTCTGATAATTCTAGCCCAAGGCGTG
GTTTTGGTTCCAAATCTGACAACAACACCAACAACAAAAAAGTGCGCAGCAGCAGCTCAAGGGAGGAAAAGGGTATGGCGTTACAACAAAGAAAATCAAC
TACTAAACAATCTGAGGCACCTGGTTTAAGTTCTCGTTTTGATGGAAAGTCTAGCAGGAATTCTGCAGACACTGATTTTGAGGAACGGCTGCAAGCAGTT
AGAAGGTCAGCACTTGAACAGAAAAAGACAGAAGCAATTAAAGAGTTTGGACCCATTGACTATGATGAACCAGTTAAAACTGAAAACAAGACAATTGGAC
TTGGAACTAAGATTGGAGTAGGAGTAGCTGTTCTGGTCTTTGGCTTGGTTTTTGCTCTTGGAGACTTTCTTCCTTCAGGAAGTGATGGTCCAACAGAAGA
AGCTACAGTAGTCAATAAAAAGCTATCAGAAGAAGAGCAGAATACTCTTCGGGCTAGGTTGAAACAATATGAATTGACACTCAGCACTGCCCCTAAGGAT
TCAATTGCACTTGAAGGAGCTGCAGTAACATTGGCTGAATTAGGAGAATATACTCGGGCTGCCTCTCTGCTTCAGGACTTGGCAAAGGAGAAACCAGGCG
ATCCTGATGTTTTTCGTTTGCTTGGAGAAATTAAATATGAACTCAAAGATTATGATGGGAGTGCTGCTGCATATAGGATTTCTGCAGCGGTATCAAAAAA
TGTTGATTTTGAAGTTCTGCGTGGTCATGCTAATGCATTGCTTGCTGCTAAGAAACCAGATGAGGCTGTTCAAGTCCTCTTGGCTTCTCGTGCTAAGCTA
AATTCTGGAAAATCAAGCAGTGTTGATATTAAGGTCGATGGGAATGGTATGGAAATTGAATCACAGGAGGTGGACCCTATTCAAGTTGACTTGCTTCTTG
GGAAGGCTTATTCAGATTGGGGACATGTAAGTGATGCCGTGTCAGTTTATGATCAGCTTATTTCTAGTCACCCTGATGACTTCCGTGGTTACCTGGCAAA
GGGAATTATATTAAAAGAAAACGGGAATGTTGGAGATGCAGAGAGGATGTTTATCCAGGCACGATTTTTTGCACCGGAGAAGGCCAAGGTGCTCGTTGAT
CGTTATGCAAGAAAGTGA
AA sequence
>Potri.008G003800.2 pacid=42806785 polypeptide=Potri.008G003800.2.p locus=Potri.008G003800 ID=Potri.008G003800.2.v4.1 annot-version=v4.1
MAIAAAAAATMITSSSKFLRFGVQCSDNSSPRRGFGSKSDNNTNNKKVRSSSSREEKGMALQQRKSTTKQSEAPGLSSRFDGKSSRNSADTDFEERLQAV
RRSALEQKKTEAIKEFGPIDYDEPVKTENKTIGLGTKIGVGVAVLVFGLVFALGDFLPSGSDGPTEEATVVNKKLSEEEQNTLRARLKQYELTLSTAPKD
SIALEGAAVTLAELGEYTRAASLLQDLAKEKPGDPDVFRLLGEIKYELKDYDGSAAAYRISAAVSKNVDFEVLRGHANALLAAKKPDEAVQVLLASRAKL
NSGKSSSVDIKVDGNGMEIESQEVDPIQVDLLLGKAYSDWGHVSDAVSVYDQLISSHPDDFRGYLAKGIILKENGNVGDAERMFIQARFFAPEKAKVLVD
RYARK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G78915 Tetratricopeptide repeat (TPR)... Potri.008G003800
[exp]
0 1
AT2G39970 PXN, PMP38, APE... peroxisomal NAD carrier, perox... Potri.002G000200
[exp]
1.00 0.9865
AT5G12130 ATTERC, PDE149 PIGMENT DEFECTIVE 149, TELLURI... Potri.006G133900
[exp]
2.44 0.9675
AT1G73060 LPA3 Low PSII Accumulation 3 (.1) Potri.001G044000
[exp]
3.16 0.9750
AT1G54350 ABCD2 ATP-binding cassette D2, ABC t... Potri.010G176400
[exp]
5.47 0.9624
AT2G04842 EMB2761 EMBRYO DEFECTIVE 2761, threony... Potri.014G162200
[exp]
9.16 0.9653
AT4G02260 AT-RSH1, RSH1, ... RELA-SPOT HOMOLOG 1, RELA/SPOT... Potri.014G126700
[exp]
9.94 0.9578 RSH1.2
AT4G15530 PPDK pyruvate orthophosphate dikina... Potri.010G027800
[exp]
11.31 0.9584
AT4G12830 alpha/beta-Hydrolases superfam... Potri.014G175700
[exp]
11.53 0.9586
AT1G66240 ATX1, ATATX1 homolog of anti-oxidant 1 (.1.... Potri.010G236500
[exp]
12.12 0.9014
AT5G22800 EMB86, EMB263, ... EMBRYO DEFECTIVE 86, EMBRYO DE... Potri.009G141300
[exp]
13.63 0.9593

Potri.008G003800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.