Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20240 494 / 1e-176 Mitochondrial substrate carrier family protein (.1) AT4G32400 218 / 1e-67 EMB42, EMB104, ATBT1, SHS1 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) AT3G51870 114 / 2e-28 Mitochondrial substrate carrier family protein (.1) AT4G01100 112 / 4e-28 ADNT1 adenine nucleotide transporter 1 (.1.2) AT3G21390 108 / 2e-26 Mitochondrial substrate carrier family protein (.1) AT4G26180 105 / 1e-25 Mitochondrial substrate carrier family protein (.1) AT1G34065 104 / 3e-25 SAMC2 S-adenosylmethionine carrier 2 (.1) AT5G01500 104 / 9e-25 TAAC thylakoid ATP/ADP carrier (.1) AT5G51050 104 / 1e-24 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT5G48970 102 / 2e-24 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G253600 [exp] 550 / 0 AT3G20240 388 / 6e-135 Mitochondrial substrate carrier family protein (.1) Potri.018G029200 [exp] 211 / 4e-65 AT4G32400 483 / 2e-171 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.006G252100 [exp] 210 / 1e-64 AT4G32400 493 / 4e-175 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Potri.002G168100 [exp] 118 / 4e-30 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.006G226300 [exp] 118 / 4e-30 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.014G095400 [exp] 118 / 5e-30 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.003G137500 [exp] 117 / 1e-29 AT4G01100 618 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.001G094100 [exp] 116 / 2e-29 AT4G01100 563 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.007G093300 [exp] 112 / 1e-27 AT5G64970 516 / 0.0 Mitochondrial substrate carrier family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033351 [exp] 530 / 0 AT3G20240 496 / 4e-177 Mitochondrial substrate carrier family protein (.1) Lus10034806 [exp] 522 / 0 AT3G20240 491 / 5e-175 Mitochondrial substrate carrier family protein (.1) Lus10002026 [exp] 207 / 1e-63 AT4G32400 525 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10002902 [exp] 204 / 4e-62 AT4G32400 522 / 0.0 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10030076 [exp] 201 / 9e-61 AT4G32400 424 / 3e-147 SODIUM HYPERSENSITIVE 1, EMBRYO DEFECTIVE 42, EMBRYO DEFECTIVE 104, ARABIDOPSIS THALIANA BRITTLE 1, Mitochondrial substrate carrier family protein (.1) Lus10033948 [exp] 119 / 3e-30 AT4G01100 604 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10033947 [exp] 117 / 1e-29 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10032364 [exp] 114 / 1e-28 AT4G01100 572 / 0.0 adenine nucleotide transporter 1 (.1.2) Lus10013527 [exp] 113 / 3e-28 AT1G14560 428 / 5e-151 Mitochondrial substrate carrier family protein (.1) Lus10032365 [exp] 111 / 2e-27 AT4G01100 602 / 0.0 adenine nucleotide transporter 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.008G004100.3 pacid=42806155 polypeptide=Potri.008G004100.3.p locus=Potri.008G004100 ID=Potri.008G004100.3.v4.1 annot-version=v4.1 ATGGATTTTGAAACTGAATCGCAGAAGAAGAAGTGCGGGGTTCTTGGAGACGTGCTCGGTGGGGTCACCATGGTGCTTCCCAAGGAGCTAGATGAACCTA TCCCTCTACCTTCTCCTCCTACTCTTGCTGTTCCTTTTGAGCTCCGATTTCAACTCCCTGATCTCAAGCTTGCTGTTAGAGATTTCATGAGGAGTAGAGA AGCCGGTGAGTTTCTCAGTGGGGCTTTAGCAGGGGCTATGACGAAAGCTGTGCTTGCGCCTTTAGAAACCATCAGAACAAGAATGGTGGTTGGTGTTGGA TCCAAAAACATTTCTGGTAGTTTCTTGGAGGTGATTGAGCAGCAGGGTTGGCAGGGACTGTGGGCTGGAAATGGAATCAATATGCTCCGTATAATTCCTA CTCAGGCAATTGAACTTGGAACATTCGAGTGTGTCAAGCGAGCGATGACATCAGCACAAGAGAAATGGAGTCAGAGCGAATGTCCAAGGGTGCAACTTGG TCCTCTTAGTTTGAGCTTTTCTCTCTCCTGGATTTCTCCAGTTGCTGTGGGTGGTGCCGCTGCTGGGATTTTTAGCACACTTGCATGCCATCCTCTCGAA GTTTTGAAGGATAGATTGACTGTGAGCCGTGATATATACCCTACTTTAAGCATTGCAATTAGCAAGATTTACAAGGATGGAGGGATTGGTGCCTTCTATG CCGGGATTTCACCTACACTGATTGGCATGCTTCCATACAGTACATGCTACTATTTCATGTATGACACGATGAAGACATCTTATTGTAAGGGAAAAAATAA GAAGTCACTAAACCGTCCAGAGATGCTCCTAATTGGAGCTTTTTCTGGTTTTACTGCTAGCACCCTTAGCTTTCCGTTAGAGGTGGCCAGGAAACGGCTA ATGGTGGGAGCTCTGCAAGGTAAATGTCCACCCCACATGGCAGCAGCACTTTCAGAAGTAATCAGGGAGGGGGGATTGATGGGACTTTACAGAGGGTGGG GTGCAAGTTGTTTAAAAGTGATGCCTTCCTCAGGCATCACTTGGATGTTTTATGAAGCTTGGAAAGATATACTGCTTGTTGAGAAACGGCTTTTATAA
AA sequence Show only first row Show all	>Potri.008G004100.3 pacid=42806155 polypeptide=Potri.008G004100.3.p locus=Potri.008G004100 ID=Potri.008G004100.3.v4.1 annot-version=v4.1 MDFETESQKKKCGVLGDVLGGVTMVLPKELDEPIPLPSPPTLAVPFELRFQLPDLKLAVRDFMRSREAGEFLSGALAGAMTKAVLAPLETIRTRMVVGVG SKNISGSFLEVIEQQGWQGLWAGNGINMLRIIPTQAIELGTFECVKRAMTSAQEKWSQSECPRVQLGPLSLSFSLSWISPVAVGGAAAGIFSTLACHPLE VLKDRLTVSRDIYPTLSIAISKIYKDGGIGAFYAGISPTLIGMLPYSTCYYFMYDTMKTSYCKGKNKKSLNRPEMLLIGAFSGFTASTLSFPLEVARKRL MVGALQGKCPPHMAAALSEVIREGGLMGLYRGWGASCLKVMPSSGITWMFYEAWKDILLVEKRLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20240			Mitochondrial substrate carrie...		Potri.008G004100 [exp]	0	1
AT1G60170		EMB1220	embryo defective 1220, pre-mRN...		Potri.002G176000 [exp]	4.24	0.7644
AT5G22790		RER1	reticulata-related 1 (.1)		Potri.009G150400 [exp]	15.96	0.7209
AT5G50960		ATNBP35, NBP35	nucleotide binding protein 35 ...		Potri.001G336900 [exp]	19.41	0.6689
					Potri.010G238700 [exp]	30.03	0.6979
AT2G42520			P-loop containing nucleoside t...		Potri.001G007900 [exp]	33.16	0.6335
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Potri.010G229800 [exp]	54.63	0.6879
AT4G32175			PNAS-3 related (.1)		Potri.012G080300 [exp]	57.44	0.6016
AT2G20790			clathrin adaptor complexes med...		Potri.010G028600 [exp]	57.86	0.6811
AT5G11010			Pre-mRNA cleavage complex II p...		Potri.012G073500 [exp]	62.89	0.6575
AT3G44680		HDA09, HDA9	histone deacetylase 9 (.1)		Potri.001G460000 [exp]	70.56	0.6783	Pt-HDA9.2,HDA904

Compare expression of checked genes

Potri.008G004100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.