Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G78895 229 / 1e-77 Reticulon family protein (.1) AT1G16825 209 / 6e-70 Reticulon family protein (.1) AT3G10915 45 / 7e-06 Reticulon family protein (.1.2.3.4.5.6) AT4G11220 43 / 4e-05 RTNLB2, BTI2 Reticulan like protein B2, VIRB2-interacting protein 2 (.1) AT4G23630 41 / 0.0002 RTNLB1, BTI1 Reticulan like protein B1, VIRB2-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G218400 [exp] 42 / 0.0001 AT2G26260 816 / 0.0 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034807 [exp] 244 / 1e-83 AT1G78895 226 / 7e-77 Reticulon family protein (.1) Lus10033352 [exp] 202 / 5e-67 AT1G78895 205 / 1e-68 Reticulon family protein (.1) Lus10034224 [exp] 44 / 1e-05 AT3G10915 291 / 1e-100 Reticulon family protein (.1.2.3.4.5.6) Lus10029041 [exp] 43 / 2e-05 AT3G10915 170 / 1e-54 Reticulon family protein (.1.2.3.4.5.6)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0484 [poplar] [flax] Peroxisome PF02453 [poplar] [flax] Reticulon Reticulon
Representative CDS sequence Show only first row Show all	>Potri.008G004200.1 pacid=42807614 polypeptide=Potri.008G004200.1.p locus=Potri.008G004200 ID=Potri.008G004200.1.v4.1 annot-version=v4.1 ATGATGACAGATAGAGATAGCATAAGCAACATCAAGGGAAAGTTAGAAGGTGGTGGTGGTGAAATAGGGAAGGCTTTGATTGGATTAGTGAGTGGAACCT TGGTTTACTACCACTGTGCCTATCGGGATTCTAGCCTCTTCTCTTTGATGTCTGATGTCCTCATCGTCCTCCTCTGCTCCCTCGCTATTCTCGGCCTTCT CTTCCGTCAATTAAACATCTCGGTACCAGTGGATCCATTGGAGTGGCAGATATCACAGGACACAGCTAACAGTATAGTAGCATGGTTTGCTAATACCATT GGAGCTGCTGAATCTGTCCTCAGGGTTGCTGCTACTGGCCACGACAAGCGCCTTTTCTTCAAGGTCATCGTTTGTCTTTACGTACTATCAGCTTTGGGCC GACTGGTCTCAGGGGTTACAATTGCTTATGCTGCATTATGCTTATTCTGTCTTTACATGCTCGCTGAGAACTCACAATCAGGCAGTGCCTGCATCTCTCG ATTTCTTGGGCGAGGTAACGGCATTTCTGTAGATTCAGATGTTCTGTAA
AA sequence Show only first row Show all	>Potri.008G004200.1 pacid=42807614 polypeptide=Potri.008G004200.1.p locus=Potri.008G004200 ID=Potri.008G004200.1.v4.1 annot-version=v4.1 MMTDRDSISNIKGKLEGGGGEIGKALIGLVSGTLVYYHCAYRDSSLFSLMSDVLIVLLCSLAILGLLFRQLNISVPVDPLEWQISQDTANSIVAWFANTI GAAESVLRVAATGHDKRLFFKVIVCLYVLSALGRLVSGVTIAYAALCLFCLYMLAENSQSGSACISRFLGRGNGISVDSDVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G78895			Reticulon family protein (.1)		Potri.008G004200 [exp]	0	1
AT1G04960			Protein of unknown function (D...		Potri.014G160800 [exp]	1.00	0.9241
AT2G05630		ATG8D	Ubiquitin-like superfamily pro...		Potri.002G228800 [exp]	6.16	0.8823
AT3G21330	bHLH	bHLH087	basic helix-loop-helix (bHLH) ...		Potri.017G041000 [exp]	7.48	0.9167
AT4G08230			glycine-rich protein (.1.2)		Potri.005G174700 [exp]	7.74	0.8714
AT5G49710			unknown protein		Potri.005G157500 [exp]	7.87	0.8705
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.008G144600 [exp]	9.21	0.8184
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Potri.005G212900 [exp]	9.21	0.8827
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.006G194100 [exp]	10.04	0.8067	SINAT2.2
AT3G10915			Reticulon family protein (.1.2...		Potri.019G057400 [exp]	10.95	0.7958
AT3G57870		SCE1A, SCE1, AH...	SUMO CONJUGATING ENZYME 1A, EM...		Potri.005G141100 [exp]	11.09	0.8566	Pt-AHUS5.1

Compare expression of checked genes

Potri.008G004200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.