Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20250 783 / 0 APUM5 pumilio 5 (.1) AT2G29190 501 / 5e-162 APUM2 pumilio 2 (.1.2) AT2G29200 499 / 4e-161 APUM1 pumilio 1 (.1) AT2G29140 495 / 1e-159 APUM3 pumilio 3 (.1) AT4G25880 489 / 1e-158 APUM6 pumilio 6 (.1.2.3) AT3G10360 466 / 3e-148 APUM4 pumilio 4 (.1) AT1G22240 190 / 9e-52 APUM8 pumilio 8 (.1) AT1G78160 183 / 2e-48 APUM7 pumilio 7 (.1) AT5G56510 181 / 9e-48 APUM12 pumilio 12 (.1) AT4G08840 157 / 2e-40 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G165100 [exp] 789 / 0 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 769 / 0 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.010G201100 [exp] 503 / 4e-162 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.008G058300 [exp] 501 / 1e-161 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.001G243400 [exp] 496 / 9e-159 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.009G034900 [exp] 488 / 6e-156 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.008G036500 [exp] 470 / 2e-149 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 469 / 3e-149 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.003G222300 [exp] 218 / 2e-59 AT5G56510 497 / 4e-168 pumilio 12 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034808 [exp] 1109 / 0 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10033353 [exp] 925 / 0 AT3G20250 732 / 0.0 pumilio 5 (.1) Lus10000516 [exp] 493 / 1e-166 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10002708 [exp] 496 / 9e-160 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10016513 [exp] 495 / 3e-158 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10001567 [exp] 489 / 4e-158 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10037976 [exp] 488 / 2e-156 AT3G10360 941 / 0.0 pumilio 4 (.1) Lus10004976 [exp] 484 / 2e-155 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10038706 [exp] 481 / 1e-153 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10040782 [exp] 480 / 9e-153 AT2G29190 1095 / 0.0 pumilio 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF00806 [poplar] [flax] PUF Pumilio-family RNA binding repeat CL0020 [poplar] [flax] PF07990 [poplar] [flax] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Potri.008G004300.1 pacid=42808232 polypeptide=Potri.008G004300.1.p locus=Potri.008G004300 ID=Potri.008G004300.1.v4.1 annot-version=v4.1 ATGGCTACTGAAAGCCCCATGAGAATGGTGGAGAGTGGTGGTGCTAGAAAGTGGTCCAGTTCTAAGGATTCTGCTGTACTTGGATCACCCTTAAGAAGTA TGGCAGCAGAGGAATTAGGATTGCTTCTGAAGAGGCAGGGATTCCATGGCGATGAAACTGACACGATTCCCAGTCGAAGTGGCAGCGCACCACCAAGTAT GGAGGGGTCATTTGCTGCTATTGGAAACCTTTTAGCTCAACACAACTCAGGCATGAGTTCTAGCTTGGAAAGTTTAGGCAGTGTTATTGAAAATTGTGAG TCAGAAGAACAACTCCGCTCTGATCCAGCCTACTTTGCATACTACTGCTCCAATGTCAACTTGAATCCAAGGCTTCCTCCACCACTATTGTCACGGGAGA ATCGGCGCCTGGTGCACCATATTGGTGGTTTTGGGAATAATTGGAGACCTGAAAGTGGCAATGGATCCCTGCAACTCCCCAAAAGTTCCCTTTCAACTCA CAAGGAGGAGCCAAATGAAGATAGATCACCTAGAGGAGCTTCAGAAAATAGTGGCGTGTATATATCTGGACAGAACACAACTTCTTTGGCAGGTCGACAT AAGAGTTTGGTGGATCTCATTCAGGAAGACTTCCCTCGCACTCCTTCTCCTGTATACAGCCAGTCCCGTTCCTCAAGCCATGCAGCAGAAGTAGGAATTG ATCATGATGTCCATGCAATTTCATCAAATGTTTCTTCTGCCAGCATGTCCAAAATATCAGAATCAAATGCTGGTTCTGATGTTTGTGTTGATACGTATGC ACTGGAGGTTGATGCTTTGAGGTTAGTATCCATCAATGATCCTCCAAGTGCTGATTTGCCAACTTCACCATGTCGTGCTGGGACTCCAACCCAGCAAAAA GGTGAATCCAGCACTAAAGGTACTGGATTTGAGGTTGATGCCTCGATTAGAGGTTCCCGTCAATCAGGCTCTGCCAGAATGGAGTTGAGAACAAAAAACA AACAAGATCAGCAAACTTATGGAAGGAATATACCACAGCATCATTCACACAGCCAGCAAGGCATTCCACATCAGGTTCAAGTGATTTCTCAAGGTACAAA TCCATCTCACAGTAGCATGGGAAAACCTTCCCATGGTTATCCTAAATTCTCCTCCACTGAGGTACTTACATCATCGCATTCTCCTGCGATGAACCCTCCT TTCTATGCACCACAAGGAGCTTATATGACTGCAGGGACTCCTTTTTACCAGCCATCTAGTGTATACCCTCCACAGTATAATATGGGTGGATATGCTGTTG GATCTGCGTTTATTTCTCCATATATGCCTGGATTTCCATCTCACAGCACTATTCCTGTGTCATTTGGCGGTGCTCCTGGTCCAAGCAATGATGGTCGAAC TGCTGATGCTTCAGCAGTTCAACAAATAGGTAGCTTGCAACATCTGGCCAAGTTTTATGGACAACATGGATTAATGCTACAACCTTCCTTTGTGGACCCT CTTCACGCACAACTCTTTCAACATCCTTTCGGGGATGTATATAGTGCTACTCCTCATAATCGTTTGGCATCAAGTGGAACTACTGGGCCTCAGATTGATT CTTTCATTCCACAGAAAGATTTGGCAGCTGCTGCTCATATGGCCAATCAGAAAGTTCTAACTTCAACAAATGGAGGTTTAAGCATTCCCGTTCCAGGAAA AATAGGAATTTCTGGTGGTAGCTATTATGGAGGTCCCCCAAGCATGGGCGTCATAACCCATTTCCCAGCCTCACCTCTTACCAGTCCAGTGCTTCCATCA TCTCCAGTAGGCGGAGTCAATCATCTAAGTCGGCGAACTGACTTGAGATTTCCCCAAGGTTCCAATAGAAATGCAGGATTATATTTCAGAGGTCAAGAAC AGAGAGCAGTTAACAGTGCTGATGACCCCAAAAGGCATTACTTTCTTGAAGAACTAAAATCAAACAATGCCCGGAAATTTGAACTCTCTGATGTAGCAGG GCGCATAGTTGAATTCAGTGTTGACCAACATGGCAGTCGATTTATTCAGCAAAAACTGGAAAATTGCAATGTTGAGGAAAAGGAGTCTGTATTTAAAGAA GTTCTTCCTCATGCTCCAAAACTAATGACAGATGTTTTTGGAAATTATGTTATTCAAAAATTTTTTGAACATGGAAGTCCTGAACAGAGAATGGAGCTTG CAGAAAAACTTTCTGGACAGATTTTGCAGTTAAGTTTGCAAATGTATGGTTGTCGTGTAATTCAGAAGGCCCTCGAAGTGATTGAGCTTGATCAGAAAGC AAAACTTGCTCAAGAGCTTGATGGGCATGTTATGAGATGCGTACATGATCAAAATGGAAACCATGTAATACAGAAGTGTATAGAATGTGTACCCGCTGAG CATATTGAATTTATCATATCTGCGTTTCGAGGCCAAGTTGTCACACTGTCAACTCATCCCTATGGTTGCCGTGTCATTCAGAGAGTTTTGGAGCATTGTT CTGATGAGCTGCAAAGTCAATGTATAGTTGATGAGATCTTAGAATCTTCCTACCTTCTTGCTCAAGACCAGTATGGCAACTATGTTACCCAGCATGTTTT GGAGAGGGGAAAGCCCCATGAGAGAAGCCAAATTATAAGCAAGTTGACTGGGAAAATTGTACAAATGAGTCAGCATAAGTATGCATCAAATGTTGTCGAG AAGTGCTTGAAGCATGCTGATGCTGCTGAAAGGGAGCTCATGATTGGGGAGATTATTGGGCAGTCTGAGGAAAATGACAACTTGCTGATAATGATGAAGG ACCAATTTGCCAATTATGTTGTCCAAAAGATACTTGAAACAAGCAATGATAAACAGAAGGAAATATTGCTCAGTCGTATCAATGCCCACCTTAATGCTCT GAAGAAGTACACTTACGGGAAGCACATCGTTGCCCGGTTCGAGCAACTATGCGTTGAAGAAGGGCAAGTGCTGGAAACTTGA
AA sequence Show only first row Show all	>Potri.008G004300.1 pacid=42808232 polypeptide=Potri.008G004300.1.p locus=Potri.008G004300 ID=Potri.008G004300.1.v4.1 annot-version=v4.1 MATESPMRMVESGGARKWSSSKDSAVLGSPLRSMAAEELGLLLKRQGFHGDETDTIPSRSGSAPPSMEGSFAAIGNLLAQHNSGMSSSLESLGSVIENCE SEEQLRSDPAYFAYYCSNVNLNPRLPPPLLSRENRRLVHHIGGFGNNWRPESGNGSLQLPKSSLSTHKEEPNEDRSPRGASENSGVYISGQNTTSLAGRH KSLVDLIQEDFPRTPSPVYSQSRSSSHAAEVGIDHDVHAISSNVSSASMSKISESNAGSDVCVDTYALEVDALRLVSINDPPSADLPTSPCRAGTPTQQK GESSTKGTGFEVDASIRGSRQSGSARMELRTKNKQDQQTYGRNIPQHHSHSQQGIPHQVQVISQGTNPSHSSMGKPSHGYPKFSSTEVLTSSHSPAMNPP FYAPQGAYMTAGTPFYQPSSVYPPQYNMGGYAVGSAFISPYMPGFPSHSTIPVSFGGAPGPSNDGRTADASAVQQIGSLQHLAKFYGQHGLMLQPSFVDP LHAQLFQHPFGDVYSATPHNRLASSGTTGPQIDSFIPQKDLAAAAHMANQKVLTSTNGGLSIPVPGKIGISGGSYYGGPPSMGVITHFPASPLTSPVLPS SPVGGVNHLSRRTDLRFPQGSNRNAGLYFRGQEQRAVNSADDPKRHYFLEELKSNNARKFELSDVAGRIVEFSVDQHGSRFIQQKLENCNVEEKESVFKE VLPHAPKLMTDVFGNYVIQKFFEHGSPEQRMELAEKLSGQILQLSLQMYGCRVIQKALEVIELDQKAKLAQELDGHVMRCVHDQNGNHVIQKCIECVPAE HIEFIISAFRGQVVTLSTHPYGCRVIQRVLEHCSDELQSQCIVDEILESSYLLAQDQYGNYVTQHVLERGKPHERSQIISKLTGKIVQMSQHKYASNVVE KCLKHADAAERELMIGEIIGQSEENDNLLIMMKDQFANYVVQKILETSNDKQKEILLSRINAHLNALKKYTYGKHIVARFEQLCVEEGQVLET

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20250		APUM5	pumilio 5 (.1)		Potri.008G004300 [exp]	0	1
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134450 [exp]	1.00	0.9199
AT2G31260		ATAPG9, APG9	autophagy 9 (APG9) (.1)		Potri.005G222800 [exp]	1.73	0.8895	APG9.2
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411700 [exp]	2.00	0.8955
AT1G22640	MYB	AtMYB3	ARABIDOPSIS THALIANA MYB DOMA...		Potri.019G081500 [exp]	2.44	0.8662	MYB6.2,MYB168
AT3G26020			Protein phosphatase 2A regulat...		Potri.008G179900 [exp]	3.46	0.8700
AT3G63010		ATGID1B, GID1B	GA INSENSITIVE DWARF1B, alpha/...		Potri.014G135900 [exp]	4.47	0.8526
AT4G33150		LKR/SDH, SDH	lysine-ketoglutarate reductase...		Potri.006G134300 [exp]	7.00	0.8613
AT4G17570	GATA	GATA26	GATA transcription factor 26 (...		Potri.001G151700 [exp]	7.48	0.8470
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	9.00	0.8526
AT5G67265			unknown protein		Potri.002G122800 [exp]	9.48	0.8389

Compare expression of checked genes

Potri.008G004300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.