Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20260 426 / 3e-147 Protein of unknown function (DUF1666) (.1) AT1G73850 126 / 2e-31 Protein of unknown function (DUF1666) (.1) AT5G39785 105 / 4e-24 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) AT1G69610 84 / 3e-17 Protein of unknown function (DUF1666) (.1) AT3G01175 42 / 0.0007 Protein of unknown function (DUF1666) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G056400 [exp] 166 / 1e-45 AT1G73850 397 / 5e-131 Protein of unknown function (DUF1666) (.1) Potri.015G046900 [exp] 157 / 3e-42 AT1G73850 416 / 2e-138 Protein of unknown function (DUF1666) (.1) Potri.017G082300 [exp] 112 / 2e-26 AT5G39785 462 / 1e-153 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.004G126800 [exp] 110 / 7e-26 AT5G39785 462 / 2e-154 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Potri.017G084200 [exp] 102 / 4e-23 AT3G01175 140 / 1e-36 Protein of unknown function (DUF1666) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034809 [exp] 478 / 9e-168 AT3G20260 487 / 3e-171 Protein of unknown function (DUF1666) (.1) Lus10033354 [exp] 457 / 8e-160 AT3G20260 462 / 5e-162 Protein of unknown function (DUF1666) (.1) Lus10038936 [exp] 156 / 4e-42 AT1G73850 457 / 4e-155 Protein of unknown function (DUF1666) (.1) Lus10027226 [exp] 154 / 4e-41 AT1G73850 455 / 5e-153 Protein of unknown function (DUF1666) (.1) Lus10037176 [exp] 103 / 2e-23 AT5G39785 334 / 4e-106 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10036751 [exp] 102 / 6e-23 AT5G39785 328 / 7e-104 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10015368 [exp] 96 / 5e-21 AT5G39785 445 / 3e-148 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2) Lus10007264 [exp] 78 / 5e-15 AT5G39785 411 / 2e-135 Protein of unknown function (DUF1666) (.1), Protein of unknown function (DUF1666) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07891 [poplar] [flax] DUF1666 Protein of unknown function (DUF1666)
Representative CDS sequence Show only first row Show all	>Potri.008G004400.2 pacid=42808843 polypeptide=Potri.008G004400.2.p locus=Potri.008G004400 ID=Potri.008G004400.2.v4.1 annot-version=v4.1 ATGGATTTCTTTAAAGCTAAGAAGTTTAGGAAAGCCCACAAACCAGGCCCGGAAAAGGATTTAGAAGATAAGCCTGTGCCGCATCCAGAGGAGCCAAGGA ATGAGAATGGTGGAGGTGGTGAAAGTGTAACTAGCAAATCAGCCAACACTGATCCTGCAGCTGAAGCTGAGGATGACGATGACGATTTTATAACCAATGA GGTAAAGAGGAGGTTGAAAGAACTGAGAAGGAACAGTTTTATGGTATTGATTCCTGAAGAAGAGTCATGTGCAGAAGAGGAGGAAGATGAAGAGGGTGAA GGTGAAGGTGAGACAAGCCCGAATGAGTGGAGGGATGTCGAAGCAGAAGGAAGGCAATGGTGGGGTGGGTTTGATGCTCTGTATGACCAGTACTGTGAGC GGATGTTATTCTTTGATCGGATGAGTGTTCAGCAGCTCGCTGAATCTGGCTGCTACACTCCCACAACTCCCTCCCCAAGGTCTGCATCCAAAAAGCTGGC ATCCCCCTTCCGCTGCCTCTCTCTGAAAAAGATAGAAGAACCTGAAGATGAAACTGAGCATCTGCAGCAGGTACAGAATGACCCATATCAAGATATTGAA ACTGCATATGTTGCTCAACTTTGCTTAACTTGGGAGGTGCTTCACTGCCAATACACTCAAATGAGTCAGAAAATCACTTGCCAACCTGAAAACCCTGCCT GTTTCAATTACAGTGCCCAGCTGTTTCAGCAATTCCAAGTTTTATTGCAAAGGTTTATTGAAAATGAGCCTTTTGAGCAGGGTCTCAGAGCAGAAATATA TGCTCGTGCAAGGAATGCCTTGCCTAAACTGCTCCAAGTTCCAAATGCAAAAGGTTTGGATAAAAAGGATACAGAAGAAACAGAATCTGATTATGTGGTC CTTGCCCCTGATCTTCTCAAGATAATTGAGAGTTCGATCCTTAATTTTCACCTTTTCCTGAAGATGGACAAGAAAAAACAAAGTAATGTCCGTAACTTGT TTGGAAATCAGAACCAGATCGCCACCCCTCTTCAACTAATTCAATCTTCGCTTGAGAAGAAAAGGATAAAACTTAAGGATCTGTGCAAGAAGAGTAAAGG ATGGAAAAAGAAATGTTGGCCTCAAAGCTACGAGAACGTTCAACTGTTGTTTAGCCTCATTGATATCAAAATCTTATCCAGGGTTATCGGGATGGTAAGA ATAAGTAAAGAGCAGTTGCTTTGGTGTGAAGAAAAGATGAAAAAGATAAACTTGCCAAATGGGAAGCTGCAGAGAGACCCCCGCCCCATCCTTTTCCCTT GTTAA
AA sequence Show only first row Show all	>Potri.008G004400.2 pacid=42808843 polypeptide=Potri.008G004400.2.p locus=Potri.008G004400 ID=Potri.008G004400.2.v4.1 annot-version=v4.1 MDFFKAKKFRKAHKPGPEKDLEDKPVPHPEEPRNENGGGGESVTSKSANTDPAAEAEDDDDDFITNEVKRRLKELRRNSFMVLIPEEESCAEEEEDEEGE GEGETSPNEWRDVEAEGRQWWGGFDALYDQYCERMLFFDRMSVQQLAESGCYTPTTPSPRSASKKLASPFRCLSLKKIEEPEDETEHLQQVQNDPYQDIE TAYVAQLCLTWEVLHCQYTQMSQKITCQPENPACFNYSAQLFQQFQVLLQRFIENEPFEQGLRAEIYARARNALPKLLQVPNAKGLDKKDTEETESDYVV LAPDLLKIIESSILNFHLFLKMDKKKQSNVRNLFGNQNQIATPLQLIQSSLEKKRIKLKDLCKKSKGWKKKCWPQSYENVQLLFSLIDIKILSRVIGMVR ISKEQLLWCEEKMKKINLPNGKLQRDPRPILFPC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20260			Protein of unknown function (D...		Potri.008G004400 [exp]	0	1
AT5G55230		ATMAP65-1	microtubule-associated protein...		Potri.001G356500 [exp]	2.44	0.8666
AT1G47740			PPPDE putative thiol peptidase...		Potri.009G113168 [exp]	3.16	0.8808
AT1G29470			S-adenosyl-L-methionine-depend...		Potri.002G075800 [exp]	4.47	0.8602
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.011G045600 [exp]	4.58	0.8113
AT5G13000		CALS3, ATGSL12	callose synthase 3, glucan syn...		Potri.001G012200 [exp]	4.89	0.8838	Pt-CALS1.3
AT2G01930	BBR_BPC	BPC1, BBR/BPC1,...	basic pentacysteine1 (.1.2)		Potri.015G033000 [exp]	8.18	0.7789
AT1G29300		UNE1	unfertilized embryo sac 1, Pla...		Potri.004G061600 [exp]	15.09	0.8237
AT1G30280			Chaperone DnaJ-domain superfam...		Potri.011G081500 [exp]	15.49	0.8169
AT3G24495		ATMSH7, MSH7, M...	MUTS HOMOLOG 6-2, ARABIDOPSIS ...		Potri.006G159200 [exp]	17.14	0.8364
AT1G53860			Remorin family protein (.1)		Potri.001G163000 [exp]	17.86	0.8279

Compare expression of checked genes

Potri.008G004400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.