Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20270 306 / 6e-100 lipid-binding serum glycoprotein family protein (.1.2.3) AT1G70960 42 / 0.0002 F-box and associated interaction domains-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034832 [exp] 343 / 3e-117 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3) Lus10033381 [exp] 231 / 7e-75 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF12937 [poplar] [flax] F-box-like F-box-like
Representative CDS sequence Show only first row Show all	>Potri.008G004500.1 pacid=42808259 polypeptide=Potri.008G004500.1.p locus=Potri.008G004500 ID=Potri.008G004500.1.v4.1 annot-version=v4.1 ATGTCAGATAATGTTGATAATAACACTAAAGTAGATTACACTCCATTTGGAAAGCTTCCTGATCATCTGCTCGTCGAGATTTTTGTCAGAGTCCCTGTAT CAGAGTGGGCTCAAATATCTTGTGTTAAAAGGCAATGGGCTAATGTGTTTCGTGGAGAATGCTTGTGGCAAGCTGCTCTCACCAGAACCTATCCACTTGC TCACCAAACTAAAAGATGGCCTGGGCCTATACCGCGAGGGCTGAGCAGAAGGAGATACACAGCTTTATATGTCAGCAAACGCGTCTTTGCTCTGGATGGT GAGATGGATGAGATTGTTGGCCATGCTTATTTGTTTCTCAAAGAGCAACTTGAATTTTCTGACATGCCATCTACTTCTAGCATACTTCATGGAACCATAA TAGATCAGTTTATTGCTTGCGGGAAATCCAGGGATATTGCCCATGAGCTTGCTTCACAAATCTGGCTTGCTGTTCTTGACAATTTGGAGGACAACGAGCA TACATTTCTCATACTGAAACGTCTTGCGCTAGAGGGTGATGTTTTTCTTCCATACCCATATACAAAATCCATTAAAGTGCAATGGAAGGTGTTTGAAAAG CTCTTCACTGATTTCCGTGATTGTTTCAATCATGTGGATTATTATGATGTGCTGGGTTGTGCTAAGAACAAGTTTCAACCAATACCATCTGCCTGGTTGG GTTACTAG
AA sequence Show only first row Show all	>Potri.008G004500.1 pacid=42808259 polypeptide=Potri.008G004500.1.p locus=Potri.008G004500 ID=Potri.008G004500.1.v4.1 annot-version=v4.1 MSDNVDNNTKVDYTPFGKLPDHLLVEIFVRVPVSEWAQISCVKRQWANVFRGECLWQAALTRTYPLAHQTKRWPGPIPRGLSRRRYTALYVSKRVFALDG EMDEIVGHAYLFLKEQLEFSDMPSTSSILHGTIIDQFIACGKSRDIAHELASQIWLAVLDNLEDNEHTFLILKRLALEGDVFLPYPYTKSIKVQWKVFEK LFTDFRDCFNHVDYYDVLGCAKNKFQPIPSAWLGY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20270			lipid-binding serum glycoprote...		Potri.008G004500 [exp]	0	1
AT2G15695			Protein of unknown function DU...		Potri.004G142000 [exp]	1.41	0.8900
AT3G02830	C3HZnF	ZFN1	zinc finger protein 1 (.1)		Potri.019G053200 [exp]	6.00	0.8507	ZFN3.2
AT5G53280		PDV1	plastid division1 (.1)		Potri.015G022900 [exp]	14.83	0.8604
AT1G07080			Thioredoxin superfamily protei...		Potri.009G076200 [exp]	15.16	0.8073
AT4G01100		ADNT1	adenine nucleotide transporter...		Potri.001G094100 [exp]	17.32	0.8272
AT1G10150		ATPP2-A10	Carbohydrate-binding protein (...		Potri.007G006600 [exp]	20.00	0.8313
AT1G68660			Ribosomal protein L12/ ATP-dep...		Potri.008G117800 [exp]	25.76	0.8815
AT1G52590			Putative thiol-disulphide oxid...		Potri.008G213200 [exp]	25.88	0.8732
AT3G03890			FMN binding (.1.2)		Potri.019G035200 [exp]	27.27	0.8789
AT4G16520		ATG8F	autophagy 8f, Ubiquitin-like s...		Potri.008G136040 [exp]	37.12	0.8263

Compare expression of checked genes

Potri.008G004500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.