Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55630 324 / 1e-109 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT4G01840 165 / 2e-47 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT4G18160 157 / 3e-44 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT5G46370 147 / 2e-40 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT1G02510 138 / 3e-38 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G46360 71 / 7e-14 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366800 [exp] 487 / 6e-174 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004700 [exp] 417 / 1e-146 AT5G55630 323 / 2e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 329 / 6e-112 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.014G113700 [exp] 181 / 8e-54 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.002G187600 [exp] 180 / 2e-53 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.011G079100 [exp] 178 / 6e-52 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.001G352500 [exp] 177 / 1e-51 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.005G203000 [exp] 170 / 2e-49 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G059200 [exp] 158 / 9e-45 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004417 [exp] 323 / 5e-109 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10001912 [exp] 290 / 5e-96 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 276 / 3e-92 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 241 / 1e-79 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004525 [exp] 145 / 4e-39 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10004538 [exp] 142 / 7e-39 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004611 [exp] 138 / 6e-37 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10015265 [exp] 137 / 1e-35 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10029261 [exp] 75 / 3e-16 ND 64 / 2e-14
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Potri.008G004600.1 pacid=42807365 polypeptide=Potri.008G004600.1.p locus=Potri.008G004600 ID=Potri.008G004600.1.v4.1 annot-version=v4.1 ATGGCTTCCAATGGTGCAAAACAGCCCTTGCTGTCAGGATTGGTGGATCCCGCCTCTCAAATAATCAATGAATGTCATCGCAACAGAAGAAGGATTCGCC ATGTTAAAAGTCCTCCCCTAGCAGAATCTGTTCCTTCAGATACTAGTGGCAATGGGCCAATTCCATGTTGTGGTTCCTTTTGGGGGGGACTACACCAGAG CCTGAAGAAAGTAGCCTTGTTATTGGCTGTCTACTTAGGTCTTGGCACAATATGCTTTTATGCTGTCAGGGATGATATCAAAGGGAAGAAAACCAATCCG ATTCTTGATTCTGTATATTTTTGTATCGTGACGATGACTACAGTAGGATATGGGGACCTGGTGCCCAATAGTGCCCTTGTGAAGTTACTTGCCTGTGTTT TTGTCTTCGTAGGGATGGCTCTTGTTGGATTGATACTGAGCAAAGCAGCAGACTATTTGGTAGACAAGCAGGAAATATTACTGATTAAAGCTCTACACAA GCATGAAAAACCTGGTCCAGCTGCGTCTCTAAAGGAAATTGAAACCAGCAAAGTGAAATACAAATGTTATTTGGCCCTGGCTATCCTTTCAGTGCTCATG CTGGTCGGAACTGTTTTCCTGTATATGGTTGAGGATTTGAACATCATTGATGCTTTCTACTGTGTCTGCTGTACCATTACAACTCTCGGTTATGGAGACA AGAGCTTCTCAACTGGAGGTGGTCGTTTGTTTGCTTTATTTTGGATGCTGACGGGTACTATTGGTTTAGGTCTGTTATTTCTATACATTGCAGAGCTATT CACTGAAAGCAGACAGAGGACACTGGTGCACTGGGTTCTTACTAGAAAGACGACCAATTTAGATCTGGAGGCAGCAGACATCGATGATGATGGTGTTGTT GGGGCCGCGGAGTTCATCCTATATAAGCTTAAAGAGATGGGGAAGATTAGCCAAGAAGATATTGCACTTGTAATGGAGGAGTTTGAGGATCTTGATGTTG ATCAATCTGGAACCTTGTCAGATTCTGATATCACGCCTGCACAGTCAACTCAGATGAAGAAATGA
AA sequence Show only first row Show all	>Potri.008G004600.1 pacid=42807365 polypeptide=Potri.008G004600.1.p locus=Potri.008G004600 ID=Potri.008G004600.1.v4.1 annot-version=v4.1 MASNGAKQPLLSGLVDPASQIINECHRNRRRIRHVKSPPLAESVPSDTSGNGPIPCCGSFWGGLHQSLKKVALLLAVYLGLGTICFYAVRDDIKGKKTNP ILDSVYFCIVTMTTVGYGDLVPNSALVKLLACVFVFVGMALVGLILSKAADYLVDKQEILLIKALHKHEKPGPAASLKEIETSKVKYKCYLALAILSVLM LVGTVFLYMVEDLNIIDAFYCVCCTITTLGYGDKSFSTGGGRLFALFWMLTGTIGLGLLFLYIAELFTESRQRTLVHWVLTRKTTNLDLEAADIDDDGVV GAAEFILYKLKEMGKISQEDIALVMEEFEDLDVDQSGTLSDSDITPAQSTQMKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.008G004600 [exp]	0	1
AT5G09300			Thiamin diphosphate-binding fo...		Potri.005G185400 [exp]	22.00	0.8246
AT3G47960			Major facilitator superfamily ...		Potri.017G076800 [exp]	24.41	0.8204
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Potri.002G106900 [exp]	24.53	0.7826
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	36.00	0.8102
AT5G38260			Protein kinase superfamily pro...		Potri.007G125600 [exp]	44.89	0.8164
AT2G31955		CNX2	cofactor of nitrate reductase ...		Potri.009G024100 [exp]	56.21	0.7943	CNX2.1
AT1G77380		AAP3, ATAAP3	amino acid permease 3 (.1)		Potri.005G181600 [exp]	65.23	0.7900
AT3G57090		FIS1A, BIGYIN	FISSION 1A, Tetratricopeptide ...		Potri.006G041900 [exp]	71.90	0.7609
AT5G46110		TPT, APE2	triose-phosphate ⁄ phosp...		Potri.008G095200 [exp]	75.25	0.7735
AT1G09575			Protein of unknown function (D...		Potri.013G161300 [exp]	78.84	0.7310

Compare expression of checked genes

Potri.008G004600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.