Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55630 322 / 3e-109 ATTPK1, ATKCO1 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) AT4G18160 168 / 1e-48 KCO6, ATTPK3, ATKCO6 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) AT5G46370 157 / 2e-44 KCO2, ATTPK2, ATKCO2 Ca2+ activated outward rectifying K+ channel 2, TANDEM PORE K+ CHANNEL 2, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 2, Ca2+ activated outward rectifying K+ channel 2 (.1) AT4G01840 155 / 8e-44 KCO5, ATTPK5, ATKCO5 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) AT1G02510 132 / 2e-36 KCO4, ATKCO4, ATTPK4 CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 4, Outward rectifying potassium channel protein (.1) AT5G46360 81 / 2e-17 KCO3, ATKCO3 Ca2+ activated outward rectifying K+ channel 3, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 3, Ca2+ activated outward rectifying K+ channel 3 (.1), Ca2+ activated outward rectifying K+ channel 3 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G366800 [exp] 490 / 1e-175 AT5G55630 370 / 1e-127 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.008G004600 [exp] 480 / 1e-171 AT5G55630 324 / 1e-109 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.016G007200 [exp] 303 / 3e-102 AT5G55630 353 / 2e-121 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Potri.014G113700 [exp] 184 / 5e-55 AT4G01840 420 / 3e-146 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.001G352500 [exp] 181 / 2e-53 AT4G18160 449 / 4e-156 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G187600 [exp] 177 / 2e-52 AT4G01840 468 / 6e-165 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Potri.011G079100 [exp] 172 / 3e-50 AT4G18160 436 / 2e-151 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.005G203000 [exp] 169 / 3e-49 AT4G18160 308 / 5e-102 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Potri.002G059200 [exp] 164 / 2e-47 AT4G18160 303 / 6e-100 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004417 [exp] 292 / 2e-97 AT5G55630 329 / 2e-111 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10016613 [exp] 271 / 2e-90 AT5G55630 254 / 7e-84 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10001912 [exp] 271 / 6e-89 AT5G55630 331 / 2e-112 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10000044 [exp] 220 / 2e-71 AT5G55630 246 / 1e-81 TWO PORE K CHANNEL 1, TWO PORE K CHANNEL, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 1, TANDEM PORE K+ CHANNEL 1, Outward rectifying potassium channel protein (.1.2) Lus10004611 [exp] 155 / 1e-43 AT4G18160 424 / 1e-146 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10004538 [exp] 151 / 8e-43 AT4G18160 362 / 2e-123 Ca2+ activated outward rectifying K+ channel 6, CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 6, Ca2+ activated outward rectifying K+ channel 6 (.1) Lus10015265 [exp] 154 / 2e-41 AT5G46340 849 / 0.0 REDUCED WALL ACETYLATION 1, O-acetyltransferase family protein (.1) Lus10004525 [exp] 149 / 8e-41 AT4G01840 402 / 3e-137 Ca2+ activated outward rectifying K+ channel 5, Ca2+ activated outward rectifying K+ channel 5 (.1) Lus10029261 [exp] 69 / 4e-14 ND 64 / 2e-14
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0030 [poplar] [flax] Ion_channel PF07885 [poplar] [flax] Ion_trans_2 Ion channel
Representative CDS sequence Show only first row Show all	>Potri.008G004700.8 pacid=42808862 polypeptide=Potri.008G004700.8.p locus=Potri.008G004700 ID=Potri.008G004700.8.v4.1 annot-version=v4.1 ATGGCTTCCAATGGTGCAAAGCAGTCCTTTCTGTCAGGATTGGTGGATCCCACCTCTCAACGAATTGATGATTGTTCTCCCAACAGAAAAAGGTTTCGCA GTCTTCAAAGTACTCTAGCAGAGTTTGTTCCTTCAGATGTTGGTGGCAAATGGCCAATTCCAAGTTATGAATTCCTTTTTGGGGGACTTCACCAGAGCCT GAAGACACTAGCTATGATCTTGGCCGTCTACGTGTCTGCTGGCACTATGTGCTTTTATGCTGTCAGGGATGATATCAAAGGGAAGACATCAAATCCGATT CTTGATTCTCTGTACTTCTGTATTGTGACGATGACCACAGTGGGATACGGGGACCTTGTGCCCAATAGTGCCTCCGTGAAGTTAGCTGTCTGTGTTTTTG TCTTCATAGGGATGGCTCTTGTTGGACTGATACTGAGCAAAGCAGGAGATTATTTGGTAGAGAAGCAGGAAATATTACTGGTTGAAGCCCTTCACATGCA TCAAAAACTCGGTCCAGCTGCATTTCTGAAGGAAACTGATATTTACAAAGTCAAATACAAATGCTATTTGGCTGTAGCTATTCTTTCAGGGCTTATGATG ATCGGATCAGTTTTCCTATACATGATTGAGGATCTGGACGTTGTTGATTCTTTCTACTGTGTCTGTTCTACCATTTCAACTCTCGGTTATGGAGATAAGA GCTTCTCAACTGGATATGGCCGTATGTTCGCTGTAGTTTGGATAATGACGGGCACTGTTGGTTTAGGTCAGTTATATATGTACATTGTTGAGCTATTCAC TGAGAGCAGGCAGAGGAAGCTGGTGAACTGGGTTCTCACCAAAATGATGGCCAATTCAGATTTCGAAGCAGCAAACATAGATGATGATGCTGTTGGCACT GCCGAGCTCATCCTGTATAAGCTTAAAGAGATGGGGAAGATCAGCCAAGAAGATATCATGCTTGCACAGACAACTCCAATGAAGAAGTGA
AA sequence Show only first row Show all	>Potri.008G004700.8 pacid=42808862 polypeptide=Potri.008G004700.8.p locus=Potri.008G004700 ID=Potri.008G004700.8.v4.1 annot-version=v4.1 MASNGAKQSFLSGLVDPTSQRIDDCSPNRKRFRSLQSTLAEFVPSDVGGKWPIPSYEFLFGGLHQSLKTLAMILAVYVSAGTMCFYAVRDDIKGKTSNPI LDSLYFCIVTMTTVGYGDLVPNSASVKLAVCVFVFIGMALVGLILSKAGDYLVEKQEILLVEALHMHQKLGPAAFLKETDIYKVKYKCYLAVAILSGLMM IGSVFLYMIEDLDVVDSFYCVCSTISTLGYGDKSFSTGYGRMFAVVWIMTGTVGLGQLYMYIVELFTESRQRKLVNWVLTKMMANSDFEAANIDDDAVGT AELILYKLKEMGKISQEDIMLAQTTPMKK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.008G004700 [exp]	0	1
AT2G25737			Sulfite exporter TauE/SafE fam...		Potri.005G124200 [exp]	1.41	0.9339
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.001G251200 [exp]	1.73	0.9426
AT3G49190			O-acyltransferase (WSD1-like) ...		Potri.017G010300 [exp]	2.44	0.9242
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Potri.013G002200 [exp]	2.64	0.9090	SOYAP2.2
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.009G045800 [exp]	3.16	0.9123
AT5G27730			Protein of unknown function (D...		Potri.005G025200 [exp]	5.47	0.9100
AT3G11210			SGNH hydrolase-type esterase s...		Potri.016G116000 [exp]	7.93	0.8753
AT4G29110			unknown protein		Potri.018G086500 [exp]	8.94	0.8829
AT3G06840			unknown protein		Potri.008G219500 [exp]	9.38	0.8729
AT3G18440		ATALMT9	aluminum-activated malate tran...		Potri.010G127400 [exp]	11.22	0.8536

Compare expression of checked genes

Potri.008G004700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.