Plant FIBer expression Database

Potri.008G005500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G253001
[exp]
74 / 1e-17 ND /
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G005500.1 pacid=42808547 polypeptide=Potri.008G005500.1.p locus=Potri.008G005500 ID=Potri.008G005500.1.v4.1 annot-version=v4.1
ATGGGGTGTGGTGATGTTACTCCATCATCTTCGCCACCAACACCACCATCACCTCTTCCCATAAGTGTTGGACCTGGAAATCGAAAGTACAATTTCTCCT
GCTCCTCCTCTCCTTCACCACCCTTCTCCCCTCCTCTTTCTAGCCACACATCTGCTGAAAACCTCCCTTTCTTGCCTCAAAGGTTGGCTAGTCCTAAACG
GGTGCCTTCAGCATTTTCATTGGAACGACCGGATCCTGATCCATTGGATTCTAAGAGTTCTTGCCTTGAAGACTTGCTAGAATGGTTTGTGCAGAGATGC
TGTAGTTTTTGTTCCAAGTTTGTTTGA
AA sequence
>Potri.008G005500.1 pacid=42808547 polypeptide=Potri.008G005500.1.p locus=Potri.008G005500 ID=Potri.008G005500.1.v4.1 annot-version=v4.1
MGCGDVTPSSSPPTPPSPLPISVGPGNRKYNFSCSSSPSPPFSPPLSSHTSAENLPFLPQRLASPKRVPSAFSLERPDPDPLDSKSSCLEDLLEWFVQRC
CSFCSKFV

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G005500
[exp]
0 1
AT2G17710 unknown protein Potri.005G107800
[exp]
1.00 0.9374
AT2G31670 Stress responsive alpha-beta b... Potri.001G413500
[exp]
2.00 0.9258
Potri.004G212550
[exp]
3.46 0.9192
AT3G26590 MATE efflux family protein (.1... Potri.019G063500
[exp]
4.47 0.9184
AT2G37000 TCP TCP11 TCP family transcription facto... Potri.016G094800
[exp]
4.89 0.8948
AT4G38620 MYB AtMYB4 myb domain protein 4 (.1) Potri.010G114000
[exp]
7.41 0.8970 MYB165
AT1G16790 ribosomal protein-related (.1) Potri.010G254100
[exp]
9.38 0.8879
AT3G57280 Transmembrane proteins 14C (.1... Potri.003G094300
[exp]
10.09 0.8717
AT3G08710 TRXH9, ATH9 THIOREDOXIN TYPE H 9, thioredo... Potri.006G110100
[exp]
11.22 0.8839
AT1G14990 unknown protein Potri.008G129900
[exp]
12.24 0.8791

Potri.008G005500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.