Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G17380 280 / 5e-94 TRAF-like family protein (.1) AT5G26260 149 / 2e-42 TRAF-like family protein (.1) AT5G26280 142 / 7e-40 TRAF-like family protein (.1.2) AT5G26290 141 / 1e-39 TRAF-like family protein (.1) AT5G26300 135 / 3e-37 TRAF-like family protein (.1) AT2G04170 125 / 5e-34 TRAF-like family protein (.1.2.3.4.5) AT5G26320 121 / 8e-32 TRAF-like family protein (.1) AT4G09770 113 / 3e-29 TRAF-like family protein (.1.2) AT4G09780 114 / 6e-29 TRAF-like family protein (.1) AT2G04190 108 / 6e-27 TRAF-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G005300 [exp] 506 / 0 AT3G17380 317 / 7e-108 TRAF-like family protein (.1) Potri.008G099600 [exp] 392 / 1e-137 AT3G17380 344 / 1e-118 TRAF-like family protein (.1) Potri.003G103200 [exp] 211 / 2e-66 AT3G17380 251 / 2e-82 TRAF-like family protein (.1) Potri.001G130700 [exp] 208 / 1e-65 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.014G055400 [exp] 196 / 5e-61 AT3G17380 244 / 2e-79 TRAF-like family protein (.1) Potri.017G049200 [exp] 194 / 9e-60 AT3G17380 240 / 1e-77 TRAF-like family protein (.1) Potri.017G049100 [exp] 186 / 4e-57 AT3G17380 246 / 3e-80 TRAF-like family protein (.1) Potri.008G199400 [exp] 165 / 2e-48 AT3G17380 211 / 6e-66 TRAF-like family protein (.1) Potri.008G012600 [exp] 87 / 8e-19 AT5G06600 1909 / 0.0 ubiquitin-specific protease 12 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029309 [exp] 82 / 6e-17 AT5G06600 1957 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10008949 [exp] 81 / 1e-16 AT5G06600 1904 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10034130 [exp] 79 / 3e-16 AT3G11910 1888 / 0.0 ubiquitin-specific protease 13 (.1.2) Lus10043456 [exp] 79 / 5e-16 AT5G06600 1925 / 0.0 ubiquitin-specific protease 12 (.1.2.3) Lus10002926 [exp] 74 / 2e-14 AT2G25320 2345 / 0.0 TRAF-like family protein (.1) Lus10001490 [exp] 74 / 2e-14 AT2G25320 2419 / 0.0 TRAF-like family protein (.1) Lus10025569 [exp] 66 / 6e-12 AT5G06600 149 / 7e-39 ubiquitin-specific protease 12 (.1.2.3) Lus10019772 [exp] 64 / 4e-11 AT5G50400 287 / 2e-84 ARABIDOPSIS THALIANA PURPLE ACID PHOSPHATASE 27, purple acid phosphatase 27 (.1) Lus10034129 [exp] 58 / 1e-09 AT5G06600 164 / 2e-46 ubiquitin-specific protease 12 (.1.2.3) Lus10021218 [exp] 59 / 3e-09 AT1G04300 897 / 0.0 TRAF-like superfamily protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0389 [poplar] [flax] TRAF PF00917 [poplar] [flax] MATH MATH domain
Representative CDS sequence Show only first row Show all	>Potri.008G005650.1 pacid=42807580 polypeptide=Potri.008G005650.1.p locus=Potri.008G005650 ID=Potri.008G005650.1.v4.1 annot-version=v4.1 ATGGTTAAAATAGAGTCATTTTCGTCACTTGGGAAAAATGCAGTGGAGACATATGAATCAGGGGTTTTTGAAGCTGGAGGCTATAAATGGAAATTAGTTC TTTATCCGAACGGAAACAAGAGCAATAATGTAAAAGATCACATCTCTCTCTATTTAGCAATGGTTGACGCAAGTTCTCTTCCACGTGGTTGGGAGGTCAA CGTGATTTTCCGGTTGTTCTTGCTTGACCAAAACAAGGACAGCTACTTGGTAATTCAAGGAAAGGAAAGACGCTTTCATGGATTGAAGCTTGAATGTGGT TTTGATCAATTCATTAAGCTTTCAACATTTAATGATGCTCGTTATGGATTCGTTCTGGAAGACACTTGTGTGCTTGGAGCTGAAGTATTTGTCTTACACC CTCGGTCCGCGCACGGGGAGCCGGAATCCCCCAACAAAGGAGAGGTCTTATCAATGAAAAAGGATCCTACTGCTTCCAAGTACACTTGGAAGATCGTGAA CTTTTCCAAGTTGGATGAAAAACGCCAAGAATCACAAATATTCTGTCACGACCCGAATCCCGGCACGGGAGATCATCAATGGAAGATAGTGCTCTATCCT AAGGGAAAAGGTCCTGGAATGGGCACCCATCTTTCTCTGTACTTGGCTCTGGATTTGGCAACGCTCCCTGCTGGTTGCAGAGTATATGCGGATTACACCT TGCGCCTTGTGGATCAAGTCTATGACAGAAAGCACGACATGTATGGTAAAGTTAAAAGCTGGTTTGGTGCCTCAAGCTCAGAAAATGGATGGTCAAGATA CGGTCCCCTGAGTTTATATCAGTCAAACAATTACCTTTTTGCCAAGGACATTTGCATAATTGAAGCAGAGGTCATAGTACTTGGAAGTGGTTCTTCGTTT TAG
AA sequence Show only first row Show all	>Potri.008G005650.1 pacid=42807580 polypeptide=Potri.008G005650.1.p locus=Potri.008G005650 ID=Potri.008G005650.1.v4.1 annot-version=v4.1 MVKIESFSSLGKNAVETYESGVFEAGGYKWKLVLYPNGNKSNNVKDHISLYLAMVDASSLPRGWEVNVIFRLFLLDQNKDSYLVIQGKERRFHGLKLECG FDQFIKLSTFNDARYGFVLEDTCVLGAEVFVLHPRSAHGEPESPNKGEVLSMKKDPTASKYTWKIVNFSKLDEKRQESQIFCHDPNPGTGDHQWKIVLYP KGKGPGMGTHLSLYLALDLATLPAGCRVYADYTLRLVDQVYDRKHDMYGKVKSWFGASSSENGWSRYGPLSLYQSNNYLFAKDICIIEAEVIVLGSGSSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G17380			TRAF-like family protein (.1)		Potri.008G005650 [exp]	0	1
AT4G33490			Eukaryotic aspartyl protease f...		Potri.007G099301 [exp]	1.00	0.9802
AT5G45540			Protein of unknown function (D...		Potri.015G059200 [exp]	1.41	0.9779
AT1G60500		DRP4C	Dynamin related protein 4C (.1...		Potri.013G119900 [exp]	2.44	0.9759
AT3G50180			Plant protein of unknown funct...		Potri.006G042873 [exp]	3.46	0.9745
AT3G18670			Ankyrin repeat family protein ...		Potri.002G048832 [exp]	4.24	0.9694
AT5G45540			Protein of unknown function (D...		Potri.006G013750 [exp]	4.69	0.9529
AT2G27140			HSP20-like chaperones superfam...		Potri.004G191101 [exp]	5.47	0.9745
AT3G22400		ATLOX5, LOX5	Arabidopsis thaliana lipoxygen...		Potri.014G177200 [exp]	6.24	0.9648
AT3G08510		ATPLC2	phospholipase C 2 (.1.2.3)		Potri.009G046600 [exp]	7.34	0.9473
AT1G73370		ATSUS6, SUS6	ARABIDOPSIS THALIANA SUCROSE S...		Potri.015G029100 [exp]	7.41	0.9675

Compare expression of checked genes

Potri.008G005650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.