Plant FIBer expression Database

Potri.008G005800 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50440 374 / 3e-132 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
AT1G11020 139 / 3e-39 RING/FYVE/PHD zinc finger superfamily protein (.1)
AT2G22120 134 / 3e-37 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
AT2G02960 40 / 0.0008 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3.4.5)
AT3G06330 40 / 0.001 RING/U-box superfamily protein (.1.2.3)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G252900
[exp]
461 / 1e-166 AT1G50440 370 / 5e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
Potri.018G073400
[exp]
146 / 2e-42 AT1G11020 389 / 2e-136 RING/FYVE/PHD zinc finger superfamily protein (.1)
Potri.007G085900
[exp]
137 / 6e-39 AT2G22120 388 / 4e-136 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Potri.005G081500
[exp]
134 / 2e-37 AT2G22120 521 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Potri.006G154800
[exp]
128 / 2e-35 AT1G11020 406 / 4e-143 RING/FYVE/PHD zinc finger superfamily protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10034832
[exp]
412 / 8e-144 AT1G50440 379 / 7e-131 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
Lus10033381
[exp]
344 / 5e-119 AT1G50440 340 / 1e-117 RING/FYVE/PHD zinc finger superfamily protein (.1.2.3)
Lus10033053
[exp]
144 / 4e-41 AT1G11020 457 / 2e-163 RING/FYVE/PHD zinc finger superfamily protein (.1)
Lus10016426
[exp]
137 / 2e-38 AT2G22120 543 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Lus10019687
[exp]
135 / 5e-38 AT2G22120 546 / 0.0 RING/FYVE/PHD zinc finger superfamily protein (.1.2)
Lus10017764
[exp]
112 / 2e-30 AT1G11020 254 / 3e-85 RING/FYVE/PHD zinc finger superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0229 RING PF12906 RINGv RING-variant domain
Representative CDS sequence
>Potri.008G005800.1 pacid=42807940 polypeptide=Potri.008G005800.1.p locus=Potri.008G005800 ID=Potri.008G005800.1.v4.1 annot-version=v4.1
ATGCAATTAGTATCAAATGATAGTCGCCAGAAAGATTTTTCAGAAAGTGAACCCATCTTATCCCAATCTAATATTTTGCAGCATTCTGAAGAAGAATCAT
CATCCTCTCGTGAAATTAAATCCTTAGGAAGGGATTGTGATGTTCATGTTGCTGAGTTAGAGAGTATTTGCATCGATGAAACTAGCCTTCTGGTGAATCC
GGACCAGCCACAGTGCCGTATATGCCTTGATATTGGAGGGGAAGACTTGATTGCACCATGTCATTGCAAAGGCACTCAGAAGCATGTCCATAGGTCATGT
CTTGATAACTGGAGGTCAACTAAGGAGGGCTTTGCTTTTGCTCACTGTACAGAATGCAGAGCAATGTTTATATTGCGGGCAAATGTCCCAGCTGACCGGT
GGTGGTTGAGACTGAAGTTTCACTTCCTTGTTGCTAGGGACCATGCATTAATTTTCATAGTAGTTCAGCTGGTTGTTGCCTTCTTGGGTGTGCTGGTGTA
CAAGTTCTACGGGGAGGAACTAAGGGAAATGTTTGGCTATGAAGAGCATCCCTATGGGTTCTATACTATGGCTGTTTTAGCAATCGTTTTGGTGGGTTTG
CTCTACGGTTTCTTCATTGCTATAATATGTGGACAAAGGATCAATGAGCGACACTATCATGTTCTTGCCAAGCAAGAACTTACAAAGGAATACGTGGTAT
TAGACAGAGAAGCTTGCAAGGATGTCCCTGAACTAGGAGCTAGTCATGTCTCAGAACTAAGAATGCTGGGTCTTTGTTAG
AA sequence
>Potri.008G005800.1 pacid=42807940 polypeptide=Potri.008G005800.1.p locus=Potri.008G005800 ID=Potri.008G005800.1.v4.1 annot-version=v4.1
MQLVSNDSRQKDFSESEPILSQSNILQHSEEESSSSREIKSLGRDCDVHVAELESICIDETSLLVNPDQPQCRICLDIGGEDLIAPCHCKGTQKHVHRSC
LDNWRSTKEGFAFAHCTECRAMFILRANVPADRWWLRLKFHFLVARDHALIFIVVQLVVAFLGVLVYKFYGEELREMFGYEEHPYGFYTMAVLAIVLVGL
LYGFFIAIICGQRINERHYHVLAKQELTKEYVVLDREACKDVPELGASHVSELRMLGLC

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50440 RING/FYVE/PHD zinc finger supe... Potri.008G005800
[exp]
0 1
AT1G10130 ATECA3, ECA3 ARABIDOPSIS THALIANA ER-TYPE C... Potri.002G117400
[exp]
2.00 0.8684
AT1G76440 HSP20-like chaperones superfam... Potri.001G243100
[exp]
3.00 0.8061
AT3G06250 FAR1_related FRS7 FAR1-related sequence 7 (.1) Potri.010G029000
[exp]
5.47 0.8341
Potri.010G139550
[exp]
6.48 0.8311
AT3G62980 AtTIR1, TIR1 TRANSPORT INHIBITOR RESPONSE 1... Potri.014G134800
[exp]
7.48 0.8063 TIR1.2
AT5G63440 Protein of unknown function (D... Potri.012G096500
[exp]
11.66 0.7611
AT1G52920 GPCR, GCR2 G-PROTEIN COUPLED RECEPTOR 2, ... Potri.001G403200
[exp]
13.49 0.8122
AT5G49220 Protein of unknown function (D... Potri.008G213300
[exp]
14.28 0.8122
AT5G19180 ECR1 E1 C-terminal related 1 (.1) Potri.010G031900
[exp]
15.42 0.7831 ECR1.2
AT3G17611 ATRBL14 RHOMBOID-like protein 14 (.1.2... Potri.010G004600
[exp]
15.62 0.8164

Potri.008G005800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.