Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16840 142 / 9e-44 unknown protein AT1G78890 124 / 8e-37 unknown protein AT2G19180 87 / 8e-22 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G252800 [exp] 235 / 8e-80 AT1G16840 146 / 8e-45 unknown protein Potri.018G142900 [exp] 87 / 3e-21 AT2G19180 80 / 3e-18 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035733 [exp] 164 / 5e-52 AT1G16840 130 / 9e-39 unknown protein Lus10037317 [exp] 159 / 3e-50 AT1G16840 133 / 4e-40 unknown protein Lus10034821 [exp] 148 / 3e-46 AT1G16840 140 / 2e-43 unknown protein Lus10033369 [exp] 128 / 2e-38 AT1G16840 119 / 3e-35 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G005900.5 pacid=42807192 polypeptide=Potri.008G005900.5.p locus=Potri.008G005900 ID=Potri.008G005900.5.v4.1 annot-version=v4.1 ATGGCTCGCTCTCTTTCTGTTTCTCTAACAAAAACATATTGCTTAACATCACCAACGAGATTCTCTTCTCGTTTGCTTACCCTTAGAGCACAATCAAACA TTCCTAACAGCAACAGTCCATCAGAAACTGATGATTCCTCTTCTGCCTCTTCGTCAACCGACCCCTTGCTTAGAAAGCTAGAAGATGCAATCCATCGGAT CATTGTGCGGCGTGCTGCACCTGATTGGCTACCTTTCTTGCCCGGATCTTCTTACTGGGTCCCATCTCCTAGATCTACATCTGGCTCTCTTGGGATTGCT CATCTCGTTGAGAAATTGGCTAATCCTTTGTCCGATGAGGAGTCCCTTTCCACCACTACTGTTAGAGGATGGCCCTCCTCTGATTACTTTGTTAAAGGTG CACCTGCACATATGATGGAGTTAAAGTTGACTTCAAAGGAAGTAGAGTCAGATACTACTTCAAGTAATGTGTCTCACTCTGAGGATGAGGAAGGGTAG
AA sequence Show only first row Show all	>Potri.008G005900.5 pacid=42807192 polypeptide=Potri.008G005900.5.p locus=Potri.008G005900 ID=Potri.008G005900.5.v4.1 annot-version=v4.1 MARSLSVSLTKTYCLTSPTRFSSRLLTLRAQSNIPNSNSPSETDDSSSASSSTDPLLRKLEDAIHRIIVRRAAPDWLPFLPGSSYWVPSPRSTSGSLGIA HLVEKLANPLSDEESLSTTTVRGWPSSDYFVKGAPAHMMELKLTSKEVESDTTSSNVSHSEDEEG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16840			unknown protein		Potri.008G005900 [exp]	0	1
AT2G17030			F-box family protein with a do...		Potri.009G140000 [exp]	10.86	0.8053
					Potri.017G080801 [exp]	11.57	0.8441
AT4G22740			glycine-rich protein (.1.2)		Potri.001G117400 [exp]	13.41	0.8331
AT5G03890			unknown protein		Potri.015G005700 [exp]	24.61	0.8248
AT5G11680			unknown protein		Potri.001G072600 [exp]	30.16	0.7632
AT5G36170		ATPRFB, HCF109	high chlorophyll fluorescent 1...		Potri.008G075800 [exp]	32.06	0.6630
AT4G30230			unknown protein		Potri.018G092800 [exp]	32.17	0.8207
AT1G74875			unknown protein		Potri.013G008800 [exp]	39.19	0.8194
AT3G47670			Plant invertase/pectin methyle...		Potri.001G108200 [exp]	41.78	0.6439
					Potri.006G034450 [exp]	46.76	0.8151

Compare expression of checked genes

Potri.008G005900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.