Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51550 496 / 2e-173 Kelch repeat-containing F-box family protein (.1) AT5G57360 125 / 7e-31 LKP1, FKL2, ADO1, ZTL ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) AT2G18915 125 / 7e-31 ADO2, LKP2 ADAGIO 2, LOV KELCH protein 2 (.1.2) AT1G68050 107 / 1e-24 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT2G36360 68 / 7e-12 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT1G03445 61 / 1e-09 BSU1 BRI1 SUPPRESSOR 1, Serine/threonine protein phosphatase family protein (.1) AT1G74150 58 / 1e-08 Galactose oxidase/kelch repeat superfamily protein (.1) AT3G05420 54 / 1e-07 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 53 / 3e-07 ACBP5 acyl-CoA binding protein 5 (.1) AT1G18610 52 / 9e-07 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G252200 [exp] 771 / 0 AT1G51550 500 / 3e-175 Kelch repeat-containing F-box family protein (.1) Potri.006G166300 [exp] 119 / 1e-28 AT5G57360 972 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.018G090800 [exp] 118 / 3e-28 AT5G57360 1042 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G135200 [exp] 111 / 5e-26 AT1G68050 968 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.010G105700 [exp] 107 / 1e-24 AT1G68050 977 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Potri.005G013000 [exp] 68 / 7e-12 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.008G024700 [exp] 61 / 6e-10 AT2G36360 639 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) Potri.013G008200 [exp] 61 / 1e-09 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.015G059400 [exp] 59 / 4e-09 AT1G18610 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033377 [exp] 543 / 0 AT1G51550 496 / 5e-174 Kelch repeat-containing F-box family protein (.1) Lus10034827 [exp] 536 / 0 AT1G51550 504 / 5e-177 Kelch repeat-containing F-box family protein (.1) Lus10020003 [exp] 119 / 7e-29 AT5G57360 790 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10019169 [exp] 120 / 8e-29 AT1G68050 969 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10029002 [exp] 120 / 1e-28 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10015531 [exp] 119 / 1e-28 AT5G57360 1051 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10025470 [exp] 111 / 8e-26 AT5G57360 1031 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10006959 [exp] 110 / 1e-25 AT5G57360 1024 / 0.0 ZEITLUPE, LOV KELCH PROTEIN 1, FKF1-LIKE PROTEIN 2, ADAGIO 1, Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10030757 [exp] 102 / 1e-22 AT1G68050 935 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) Lus10013237 [exp] 101 / 1e-22 AT1G68050 940 / 0.0 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0186 [poplar] [flax] Beta_propeller PF13415 [poplar] [flax] Kelch_3 Galactose oxidase, central domain CL0186 [poplar] [flax] Beta_propeller PF13418 [poplar] [flax] Kelch_4 Galactose oxidase, central domain
Representative CDS sequence Show only first row Show all	>Potri.008G006300.1 pacid=42807927 polypeptide=Potri.008G006300.1.p locus=Potri.008G006300 ID=Potri.008G006300.1.v4.1 annot-version=v4.1 ATGGCTACTTTCTTCATGGCAAAGAGTACTCCTAGAAGCAGCAACATTGGATCATCATCAGCATCACCGATAGTTAAGCTGGCTGATGACCATCTCTTCA CAATTATGCTTCTGCTTCCTGTAGATTCACTTATCTCCTTTGCCATGACTTGCAAAAGGTTCAGGTCCTTAACAACTTCTGATACACTGTGGGAGTCCAT ATGCAGGAGGGAGTGGGGGTCCACATCAGTGGATGCCTTCAAGTCTTCTATCAATACCAACAACAATCAGCAGTTGCCATGGATGAGGTTATACAAGCAG GTGTCTCAGCTTGACTCATTTTCTTGCCATAAACTGCCTGACCCAGATAGTGACTTGATGCTCCCAACTCCCAGGGCTTCTCACTCTCTCAACTTTGTAT CTGATTGCCTGGTCTTGTTTGGTGGTGGCCGTGAAGGAGGGCGAGATCTCGATGATACATGGGTGGCATACATAGGTAAAGATTTTCAAAGAATGCTAAA ATGGCAGAAGGTTACCTCAGGAATTCCGAGTGGGAGATTTGGGCATACTTGCGCCGTCATTGGCGAAAATCTTGTGCTTTTTGGAGGAATTAATGATCGT GGGATGCGTCAAAATGATACATGGGTGGGGCAAGTAGTACTTGGTGAGAACCTTGGTATAACAACATTGTCATGGAGGCTGCTTGATGTGAGCTCCGTAG CACCACCACCCCGTGGGGCTCATGCTGCTTGTTGCATTGATAAAAGGACAATGGTCATCCATGGAGGCATTGGATTGTACGGCCTTAGATTGGGAGATAC TTGGATTCTAGAACTTTCAGAGAATTTCTGTTCTGGAACGTGGATAGAGCTGGTGGCTCATCCATCACCTCCACCTCGTTCAGGACACACATTGACATGT ATCGAAGGAACAGGAACTGTTCTATTTGGAGGAAGAGGTTTGGGGTATGATGTGCTGCATGATGTCTGGCTCTTGCAAGCGTCTGAGGATCAACTCAAGT GGGTACAGATGCTCTATAATTTGCAAGACATACCTGAAGGAGTCTCCCTCCCGCGAGTTGGCCACTCAGCCACACTAATTTTGGGAGGTCGGCTGCTAAT CTATGGAGGTGAAGATTCACAGAGACACAGGAAGGGAGATTTTTGGGTGTTAGATGTTAGTAAGATCCCATCAATTAAAGAGCAGTCAACTCCATTAAAT TCAAGGGGATTACAAGCAAATATGTGGAGAAGGCTCAAGGCAAAGGGTTATAAACCCAACTGCAGATCATTCCATCGAGCCTGTGCAGATCATTCAGGGC GTCGCTTGTACGTTTTTGGTGGAATGGTGGATAGCTTACTTCACCCTGCCGAAGCATCTGAGTTGAGGTTTGATGGGGAGCTCTTTCTGGTAAAATTTGA GCTGGAAACAGGAGCAGTAAGGTGCTGA
AA sequence Show only first row Show all	>Potri.008G006300.1 pacid=42807927 polypeptide=Potri.008G006300.1.p locus=Potri.008G006300 ID=Potri.008G006300.1.v4.1 annot-version=v4.1 MATFFMAKSTPRSSNIGSSSASPIVKLADDHLFTIMLLLPVDSLISFAMTCKRFRSLTTSDTLWESICRREWGSTSVDAFKSSINTNNNQQLPWMRLYKQ VSQLDSFSCHKLPDPDSDLMLPTPRASHSLNFVSDCLVLFGGGREGGRDLDDTWVAYIGKDFQRMLKWQKVTSGIPSGRFGHTCAVIGENLVLFGGINDR GMRQNDTWVGQVVLGENLGITTLSWRLLDVSSVAPPPRGAHAACCIDKRTMVIHGGIGLYGLRLGDTWILELSENFCSGTWIELVAHPSPPPRSGHTLTC IEGTGTVLFGGRGLGYDVLHDVWLLQASEDQLKWVQMLYNLQDIPEGVSLPRVGHSATLILGGRLLIYGGEDSQRHRKGDFWVLDVSKIPSIKEQSTPLN SRGLQANMWRRLKAKGYKPNCRSFHRACADHSGRRLYVFGGMVDSLLHPAEASELRFDGELFLVKFELETGAVRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51550			Kelch repeat-containing F-box ...		Potri.008G006300 [exp]	0	1
					Potri.004G170350 [exp]	2.44	0.9049
AT1G69800			Cystathionine beta-synthase (C...		Potri.017G053600 [exp]	6.48	0.8728
AT3G53690			RING/U-box superfamily protein...		Potri.019G093600 [exp]	7.07	0.8614
AT1G15200			protein-protein interaction re...		Potri.001G208200 [exp]	9.94	0.8796
AT2G02570			nucleic acid binding;RNA bindi...		Potri.004G229200 [exp]	12.16	0.7870
AT4G22290			Ubiquitin-specific protease fa...		Potri.002G176200 [exp]	12.84	0.8569
AT3G62390		TBL6	TRICHOME BIREFRINGENCE-LIKE 6 ...		Potri.014G120201 [exp]	13.96	0.8592
AT5G42240		SCPL42	serine carboxypeptidase-like 4...		Potri.002G071800 [exp]	14.28	0.8022
					Potri.006G143901 [exp]	16.70	0.8309
AT2G21070		FIO1	FIONA1, methyltransferases (.1...		Potri.009G131700 [exp]	17.14	0.8146

Compare expression of checked genes

Potri.008G006300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.