Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51560 533 / 0 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT3G21140 507 / 1e-180 Pyridoxamine 5'-phosphate oxidase family protein (.1) AT3G03890 92 / 5e-21 FMN binding (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G252300 [exp] 666 / 0 AT1G51560 561 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Potri.019G035200 [exp] 87 / 5e-19 AT3G03890 452 / 4e-161 FMN binding (.1.2) Potri.013G057700 [exp] 82 / 1e-17 AT3G03890 429 / 6e-153 FMN binding (.1.2) Potri.001G470300 [exp] 44 / 9e-05 AT2G04690 276 / 3e-95 Pyridoxamine 5'-phosphate oxidase family protein (.1.2) Potri.017G148600 [exp] 42 / 0.0005 AT3G49140 256 / 1e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034828 [exp] 542 / 0 AT1G51560 508 / 0.0 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10033378 [exp] 505 / 3e-179 AT1G51560 483 / 9e-171 Pyridoxamine 5'-phosphate oxidase family protein (.1) Lus10010649 [exp] 76 / 5e-15 AT3G03890 409 / 9e-144 FMN binding (.1.2) Lus10013617 [exp] 76 / 1e-14 AT3G03890 363 / 6e-122 FMN binding (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0336 [poplar] [flax] FMN-binding PF13883 [poplar] [flax] Pyrid_oxidase_2 Pyridoxamine 5'-phosphate oxidase
Representative CDS sequence Show only first row Show all	>Potri.008G006400.2 pacid=42807643 polypeptide=Potri.008G006400.2.p locus=Potri.008G006400 ID=Potri.008G006400.2.v4.1 annot-version=v4.1 ATGGAATCCATGCTGATGACAAGTTCAGTCTTTCCAGAGACATACCCACTTCTCAATAACATCCCCTCTTCTCCTCTGCCCCCTTCTATCAAATTACACA ACACCAAGCGGACCGGGTCTCTCAGATTTGCCCAAAATCCCCACTTTATTTCCCTTCGTCTTCCAGCTCTAGCACGTCATGTTTCAGGTGGTGATGGTGA TGATCAGGGGCCGTTAACTAATGGGTCTGCCTTCTTTTCTGATGAGACTCTTTCTTTGCCTCAGGATAACATAAATCAAAGTGAAAGTAGTGAAAAGGAT GCGGAGAAAATACTGAAGGTGGAGACGCCTCTGATTGTACCCCATGGAAATGGAACAGGTGGGGGAGCCAGAGCTGGGCTTTTCAGAACACCAATTTCTG GTGGAGTGCAGAGTGCAACATCAGCTCATGGCTTACCTCGACCAGCATTAGCAGTCCGCAATTTGATGGAGCAGGCTAGATTTGCTCATCTGTGCACTGT AATGTCTCGAATGCACCATCGAAGAGAAGGGTATCCATTTGGTTCCTTGGTAGATTTTGCACCAGATTCAATGGGCCATCCTATTTTTTCATTTTCACCA TTGGCCATCCACACAAGGAATTTGCTAGTAGACCCTAGATGCACACTAGTTGTGCAGATCCCGGGGTGGAGTGGCTTATCAAATGCAAGGGTAACAATTT TTGGTGATGTTTTCCCACTCCCAGAACACCAACAGGAGTGGGCTCATAAGCAATACATTGCAAAACATCAACAGGGGCCTTCCCAGCAGTGGGGGAATTT CTACTATTTCAGGATGCAAAACATAAGTGACATATATTTTATTGGAGGTTTTGGCACTGTCGCTTGGGTTGATGTCAAGGAATACGAGGCCCTTCAGCCT GATAAGATTGCAGTTGACGGAGGGGAGCAAAATCTCAAGGAACTTAATGCAATTTTCTCAAAACCCCTTAAAGAGCTCCTGTCATCTGAAACAGAGGTAG ATGATGCTGCCTTTATATCAATAGACAGTAAAGGAACTGATATTCGGGTCCGTCAAGGGGCACAGTTCAACATACAGAGGCTATCATTTGAAGACGGGCA CGCTGTTGAAACATTAGAGGAAGCCAAGGCTGCTCTTTGGAAACTAATAAATAAAGGCCAAGTGCACGGTTTGCAGAAATAA
AA sequence Show only first row Show all	>Potri.008G006400.2 pacid=42807643 polypeptide=Potri.008G006400.2.p locus=Potri.008G006400 ID=Potri.008G006400.2.v4.1 annot-version=v4.1 MESMLMTSSVFPETYPLLNNIPSSPLPPSIKLHNTKRTGSLRFAQNPHFISLRLPALARHVSGGDGDDQGPLTNGSAFFSDETLSLPQDNINQSESSEKD AEKILKVETPLIVPHGNGTGGGARAGLFRTPISGGVQSATSAHGLPRPALAVRNLMEQARFAHLCTVMSRMHHRREGYPFGSLVDFAPDSMGHPIFSFSP LAIHTRNLLVDPRCTLVVQIPGWSGLSNARVTIFGDVFPLPEHQQEWAHKQYIAKHQQGPSQQWGNFYYFRMQNISDIYFIGGFGTVAWVDVKEYEALQP DKIAVDGGEQNLKELNAIFSKPLKELLSSETEVDDAAFISIDSKGTDIRVRQGAQFNIQRLSFEDGHAVETLEEAKAALWKLINKGQVHGLQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51560			Pyridoxamine 5'-phosphate oxid...		Potri.008G006400 [exp]	0	1
AT1G73965		CLE13	CLAVATA3/ESR-RELATED 13 (.1)		Potri.008G115600 [exp]	1.41	0.9190	CLE12.2
AT5G16490		RIC4	ROP-interactive CRIB motif-con...		Potri.014G147000 [exp]	7.34	0.8989	Pt-RIC2.1
AT5G13500			unknown protein		Potri.003G195600 [exp]	10.90	0.8839
AT3G57220			Glycosyl transferase family 4 ...		Potri.006G045700 [exp]	11.31	0.8909
AT5G17310		AtUGP2, UGP2	UDP-glucose pyrophosphorylase ...		Potri.017G144700 [exp]	12.72	0.8751
					Potri.008G115533 [exp]	12.84	0.8906
AT4G18550		AtDSEL	Arabidopsis thaliana DAD1-like...		Potri.011G064400 [exp]	15.00	0.8960
AT2G35880			TPX2 (targeting protein for Xk...		Potri.016G066600 [exp]	16.06	0.8879
AT1G32930			Galactosyltransferase family p...		Potri.001G450200 [exp]	18.97	0.8834
AT1G15690		FUGU5, AtVHP1;1...	FUGU 5, ARABIDOPSIS THALIANA V...		Potri.006G063000 [exp]	24.18	0.8638	AVP.5

Compare expression of checked genes

Potri.008G006400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.