Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G71070 322 / 4e-107 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G39990 288 / 1e-93 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT3G24040 284 / 3e-92 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT5G15050 284 / 4e-92 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G03520 281 / 1e-91 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G27480 277 / 2e-89 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT3G15350 272 / 2e-87 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) AT4G03340 269 / 8e-86 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT2G37585 258 / 3e-82 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) AT1G53100 257 / 2e-81 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G114800 [exp] 331 / 6e-111 AT1G71070 581 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.008G128000 [exp] 326 / 9e-109 AT1G71070 574 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.017G075600 [exp] 297 / 5e-97 AT5G15050 671 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.013G145500 [exp] 295 / 3e-96 AT1G03520 667 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.019G104600 [exp] 292 / 6e-95 AT4G03340 639 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.004G130300 [exp] 286 / 6e-93 AT5G15050 654 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G053800 [exp] 286 / 1e-92 AT3G24040 505 / 6e-179 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Potri.001G399500 [exp] 283 / 6e-92 AT3G15350 622 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2) Potri.011G119600 [exp] 283 / 8e-92 AT3G15350 614 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034829 [exp] 395 / 2e-135 AT1G71070 280 / 7e-91 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10033379 [exp] 391 / 4e-134 AT1G71070 278 / 2e-90 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10010887 [exp] 330 / 4e-110 AT1G71070 572 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10012710 [exp] 317 / 7e-105 AT1G71070 561 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10023687 [exp] 303 / 3e-99 AT3G24040 491 / 2e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10014495 [exp] 303 / 3e-99 AT5G15050 649 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10032189 [exp] 302 / 8e-99 AT5G15050 648 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10011765 [exp] 298 / 2e-97 AT3G24040 491 / 4e-173 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10025339 [exp] 283 / 1e-91 AT2G37585 483 / 6e-171 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1) Lus10001076 [exp] 277 / 6e-89 AT5G15050 512 / 0.0 Core-2/I-branching beta-1,6-N-acetylglucosaminyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF02485 [poplar] [flax] Branch Core-2/I-Branching enzyme
Representative CDS sequence Show only first row Show all	>Potri.008G006500.1 pacid=42808379 polypeptide=Potri.008G006500.1.p locus=Potri.008G006500 ID=Potri.008G006500.1.v4.1 annot-version=v4.1 ATGAGGACATCAAAAATTTCTTCAGGGAATTCAGGCTATCATGCATGGATTCTTGCTTTTGCAATGAGTCTACTGATACTGATTGCCTTGTCGAAGTCAT GGTTTTATGATCACGCTTCTGCTACTGCAAGTGAGGATTTGCAATACTTTTCAGTGATTGTCCCTTCAAAAGGGCGGGCCTATCCTCCTGTTCTTGCTTA TTGGATATGTGGTACTAGTGGAGATGGGAAGAGAATGTTAAGGCTATTAAAAGCAATTTATCATCCAAGGAACCAATATCTATTGCAGCTTGATGCTGAA TCCTCAGATTATGAAAGGGCAGAGTTAGTTGTTTCAGTTCAATCTGAAAGTTTGTTTCAAGCATACGGTAATGTTAATGTTGTTGGAAAAGGTTATGCTA TCAACGAAATGGGATCGTCTGCTCTTGCTGCCATACTCAACGCTGCTGCATTGCTTCTTAAGCTGAGTGCAGACTGGGATTGGTTCATCAATTTAAGTGT CTCAGACTATCCTCTAGTGAGTCAAGATGATCTCCTCCATGCCTTCACTTCCTTGCCAAGAGATCTCAACTTCATCAACTATACTAATGACACTGCGAAA AACGAGATACACAAGATTAACCAAATTGTTGTAGACCCCAGCTTACATCTTCAGAAGAGTAGCCACCTTTATTACGCTGTTGAGACTCGAACAACACCTG ATGCTTTCAAGATATTTGGAGGTTCACCCTGGCTGGTTCTTACAAGAGCTTTCATGGAGTACTGTGTCCAAGGATGGGACAACCTTCCAAGAAAACTACT AATGTACTTCAGCAACACGGCATCCCCACTTGAATCGTATTTCCACTCTGTCCTCTGCAACTCTCCTGAGTTTCAAAACACAACAGTAAGCAATGATTTA AGGTACAATATTCTGGAAACTACTACAGATGGGGAATCACCTTATGACAAAATGCTAAATGGTGGAGCAGCATTTGCAAGGCCATTTAAAGAAGATGCTG CTGCACTAAACATGATAGATGAGAATGTCTTGAACCGTGAACCCAATGGATTGGTGCCTGGAAAATGGTGCTTAGACCAAGGTATGAACAAGAGCTCAGA GGCATCAAAGCCTCCAGGGGAGGATTTGTGTTCAACTTGGGGTAACATTAATGATGTCAAGCCAGGATCTTATGGTATCAAGCTTGCATTTTTATTGTCT AAGATTGCCGGTGAAGAGAAATTGACAACTAGTCAATGCCTTCAAGCTACACAAATGGGGTCATCATAG
AA sequence Show only first row Show all	>Potri.008G006500.1 pacid=42808379 polypeptide=Potri.008G006500.1.p locus=Potri.008G006500 ID=Potri.008G006500.1.v4.1 annot-version=v4.1 MRTSKISSGNSGYHAWILAFAMSLLILIALSKSWFYDHASATASEDLQYFSVIVPSKGRAYPPVLAYWICGTSGDGKRMLRLLKAIYHPRNQYLLQLDAE SSDYERAELVVSVQSESLFQAYGNVNVVGKGYAINEMGSSALAAILNAAALLLKLSADWDWFINLSVSDYPLVSQDDLLHAFTSLPRDLNFINYTNDTAK NEIHKINQIVVDPSLHLQKSSHLYYAVETRTTPDAFKIFGGSPWLVLTRAFMEYCVQGWDNLPRKLLMYFSNTASPLESYFHSVLCNSPEFQNTTVSNDL RYNILETTTDGESPYDKMLNGGAAFARPFKEDAAALNMIDENVLNREPNGLVPGKWCLDQGMNKSSEASKPPGEDLCSTWGNINDVKPGSYGIKLAFLLS KIAGEEKLTTSQCLQATQMGSS

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G71070			Core-2/I-branching beta-1,6-N-...		Potri.008G006500 [exp]	0	1
AT5G45970		ATRAC2, ATROP7,...	RHO-RELATED PROTEIN FROM PLANT...		Potri.011G061500 [exp]	1.41	0.9449	ARAC2.1
AT2G17530			Protein kinase superfamily pro...		Potri.005G102100 [exp]	2.00	0.9459
AT3G12955			SAUR-like auxin-responsive pro...		Potri.011G143400 [exp]	3.46	0.9223	SAUR5
AT5G66420			unknown protein		Potri.007G021000 [exp]	3.60	0.9213
AT1G56720			Protein kinase superfamily pro...		Potri.005G003300 [exp]	5.29	0.9341
AT1G56720			Protein kinase superfamily pro...		Potri.013G003700 [exp]	5.47	0.9411
AT2G35880			TPX2 (targeting protein for Xk...		Potri.006G200400 [exp]	7.07	0.9271
AT5G54110		ATMAMI	membrane-associated mannitol-i...		Potri.011G126200 [exp]	7.54	0.8899	ATMAMI.1
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.005G226400 [exp]	8.12	0.9306	NAP4.2
AT5G57830			Protein of unknown function, D...		Potri.006G181300 [exp]	8.71	0.9170

Compare expression of checked genes

Potri.008G006500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.