Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	EMB101.3
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39770 618 / 0 VTC1, SOZ1, GMP1, EMB101, CYT1 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) AT3G55590 592 / 0 Glucose-1-phosphate adenylyltransferase family protein (.1) AT4G30570 486 / 1e-173 Glucose-1-phosphate adenylyltransferase family protein (.1) AT2G04650 200 / 2e-60 ADP-glucose pyrophosphorylase family protein (.1) AT1G74910 199 / 5e-60 ADP-glucose pyrophosphorylase family protein (.1.2.3) AT2G34970 50 / 3e-06 Trimeric LpxA-like enzyme (.1) AT3G02270 47 / 1e-05 Trimeric LpxA-like enzyme (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G198800 [exp] 635 / 0 AT2G39770 685 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.008G060100 [exp] 634 / 0 AT2G39770 648 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.006G090300 [exp] 608 / 0 AT2G39770 669 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Potri.012G075500 [exp] 198 / 2e-59 AT1G74910 717 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.015G070500 [exp] 184 / 3e-54 AT1G74910 736 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Potri.005G045200 [exp] 54 / 1e-07 AT2G34970 969 / 0.0 Trimeric LpxA-like enzyme (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004699 [exp] 621 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10040265 [exp] 621 / 0 AT2G39770 678 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10024356 [exp] 603 / 0 AT2G39770 666 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10030156 [exp] 475 / 5e-169 AT2G39770 518 / 0.0 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10001014 [exp] 427 / 2e-150 AT2G39770 476 / 1e-169 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10010879 [exp] 231 / 6e-76 AT2G39770 246 / 1e-82 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2) Lus10032440 [exp] 184 / 6e-54 AT1G74910 747 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10042942 [exp] 183 / 7e-54 AT1G74910 734 / 0.0 ADP-glucose pyrophosphorylase family protein (.1.2.3) Lus10014608 [exp] 173 / 2e-52 AT3G55590 175 / 1e-53 Glucose-1-phosphate adenylyltransferase family protein (.1) Lus10039916 [exp] 114 / 2e-29 AT2G39770 116 / 1e-30 VITAMIN C DEFECTIVE 1, SENSITIVE TO OZONE 1, GDP-MANNOSE PYROPHOSPHORYLASE 1, EMBRYO DEFECTIVE 101, CYTOKINESIS DEFECTIVE 1, Glucose-1-phosphate adenylyltransferase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0536 [poplar] [flax] HEXAPEP PF00132 [poplar] [flax] Hexapep Bacterial transferase hexapeptide (six repeats) CL0110 [poplar] [flax] GT-A PF12804 [poplar] [flax] NTP_transf_3 MobA-like NTP transferase domain
Representative CDS sequence Show only first row Show all	>Potri.008G006700.1 pacid=42807175 polypeptide=Potri.008G006700.1.p locus=Potri.008G006700 ID=Potri.008G006700.1.v4.1 annot-version=v4.1 ATGAAGGCACTGATCCTTGTTGGAGGGTTTGGAACACGGTTGAGGCCGTTGACTCTCAAACACCCTAAACCACTTGTTGAGTTTGCTAACAAACCTATGA TCCTGCATCAGATAGAGGCTCTCAAGGCTATTGGAGTGACTGAAGTTGTTTTGGCTATCAACTACAAGCCCGAGGAGATGATGAACTTCTTGAAGGATTT TGACACGAAGCTTGATATTAAGATCACTTGCTCACAAGAGACCGAGCCGCTCGGCACTGCTGGTCCTTTGGCACTAGCAAGGGACAAACTAATCGATGAT TCTGGCGAACCGTTTTTTGTTCTCAATAGTGATGTCATCTGCGAATACCCACTCAAGCTGATGATAGAATTCCACAAAGCCCATGGTGGAGAGGCTTCCA TAATGGTGACCAAGGTGGATGAGCCATCAAAGTATGGTGTTGTGGTTATGGAAGAATCCACGGGAAAAGTTGAGAGATTTGTGGAAAAACCAAAAGCATT TGTTGGTAACAAAATCAATGCTGGAATTTATCTGTTGAACCCATCTGTTGTTGATAGAATTGAACTGAGGCCCACCTCAATTGAGAAAGAGGTCTTCCCG AAAATAGCGGCAGAGAAGAAGCTCTATGCAATGGCGCTTCCAGGATTTTGGATGGACATTGGTCAGCCAAGGGACTATATTACAGGCCTAAGACTCTACC TAGATTCCCTTAGAAAAAAATCCCCATCTAAGTTGGCCACTGGTCCCCATATCATGGGAAATGTTTTGGTGGATGAGACTGCGGAGATTGGAGAGGGTTG TTTGATTGGACCTGATGTTGCAATAGGACCAGGATGTGTTGTCGAGTCAGGAGTTAGACTCTCTCGTTGCTCTGTGATGAGTGGAGTTACCATCAAGGAG CATGCTTGCATATCTAGCAGTATCATCGGGTGGAGCTCCACAGTGGGGCAAGGGGCCTGCGTAGAGAAGACAGTCCTTGGAGAAGCTGTCCATGTAAAGA AGACAAGCCTTGGAGAAGTTGTCTATGTGTGTGACGATGTTTACAGCAATGGAGGTGTGGTTTTACCTGGCAGAGAGATCGAGTCGAGCAATTTGAAGCC GGAGAGTAATGTTAGGGTTTGGGATTAA
AA sequence Show only first row Show all	>Potri.008G006700.1 pacid=42807175 polypeptide=Potri.008G006700.1.p locus=Potri.008G006700 ID=Potri.008G006700.1.v4.1 annot-version=v4.1 MKALILVGGFGTRLRPLTLKHPKPLVEFANKPMILHQIEALKAIGVTEVVLAINYKPEEMMNFLKDFDTKLDIKITCSQETEPLGTAGPLALARDKLIDD SGEPFFVLNSDVICEYPLKLMIEFHKAHGGEASIMVTKVDEPSKYGVVVMEESTGKVERFVEKPKAFVGNKINAGIYLLNPSVVDRIELRPTSIEKEVFP KIAAEKKLYAMALPGFWMDIGQPRDYITGLRLYLDSLRKKSPSKLATGPHIMGNVLVDETAEIGEGCLIGPDVAIGPGCVVESGVRLSRCSVMSGVTIKE HACISSSIIGWSSTVGQGACVEKTVLGEAVHVKKTSLGEVVYVCDDVYSNGGVVLPGREIESSNLKPESNVRVWD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G39770		VTC1, SOZ1, GMP...	VITAMIN C DEFECTIVE 1, SENSITI...		Potri.008G006700 [exp]	0	1	EMB101.3
AT1G75720			Plant protein of unknown funct...		Potri.019G021000 [exp]	2.00	0.8911
AT5G60020		LAC17, ATLAC17	laccase 17 (.1)		Potri.011G120200 [exp]	4.47	0.8744
AT1G47128		RD21A, RD21	RESPONSIVE TO DEHYDRATION 21A,...		Potri.001G302100 [exp]	5.74	0.8756
AT1G75280			NmrA-like negative transcripti...		Potri.002G034400 [exp]	7.81	0.8928
AT5G05570			transducin family protein / WD...		Potri.008G069700 [exp]	12.64	0.8743
AT2G42005			Transmembrane amino acid trans...		Potri.004G206800 [exp]	14.28	0.8257
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.010G249600 [exp]	15.19	0.8699
AT4G20410		GAMMA-SNAP, GSN...	gamma-soluble NSF attachment p...		Potri.011G155200 [exp]	17.97	0.8549	Pt-GSNAP.1
AT4G34500			Protein kinase superfamily pro...		Potri.004G154000 [exp]	18.46	0.8638
AT5G19860			Protein of unknown function, D...		Potri.003G217200 [exp]	18.65	0.8194

Compare expression of checked genes

Potri.008G006700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.