Plant FIBer expression Database

Potri.008G007100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G007100.3 pacid=42808845 polypeptide=Potri.008G007100.3.p locus=Potri.008G007100 ID=Potri.008G007100.3.v4.1 annot-version=v4.1
ATGGTGAGATGTTTTTACTGCTTGGAATGGAGAGCTAATTTCTTACTCGAAGACAAAATGGGAGCTGTAGAATTCGGGGCTCTAAAATACTGGCTCCCAC
AGGTAAATTTTACTTGGACTCATGTGGAGAGTCTTGTCTTATTGAATGAAGCAAGTTCGACCTCAACTGACAATTCTTCAGGCAATGAAGCAACAAAGGA
GCATTCTTCCCATGTTGCTGGTCTGGACAAGAACAAAAAGGAAAAGAAGAAGAAAGGGATGAAGATTATGGAGGGTCCTGAAATAGTGGATGGAGAAAAT
AGAGTTTTGGAGGGAGGTGCTTCAAGTTCTAGTGCTACTTCACGTGATATTGTCACTAATGAAGGAAATGGAAGGTCAAAAGAGCATGATCTCGGTGCTA
AAAACAGGAAACAAACAGTGAAGAAGAAGAATGGGAAGAACAACATGGAGAGTGATGATGAAGCAAATGAATTGCCTGGGAAGCATAATTTTCACAGTTT
AATCTTGGTGGGACTGGAATCGGAAAGTACAGTCTGTTATTTTAGATTTTATAGTATATGGGCTGCTTCCTCTGTTAAAAAGCAAATTATCAGACGAATG
AAGGCATCTTCCTTTTATCAAACATTGCATGGTTGGCTTTGTAACAACTGTATCATCCTCAAGGAACTGGTTTTTCTTAATTAG
AA sequence
>Potri.008G007100.3 pacid=42808845 polypeptide=Potri.008G007100.3.p locus=Potri.008G007100 ID=Potri.008G007100.3.v4.1 annot-version=v4.1
MVRCFYCLEWRANFLLEDKMGAVEFGALKYWLPQVNFTWTHVESLVLLNEASSTSTDNSSGNEATKEHSSHVAGLDKNKKEKKKKGMKIMEGPEIVDGEN
RVLEGGASSSSATSRDIVTNEGNGRSKEHDLGAKNRKQTVKKKNGKNNMESDDEANELPGKHNFHSLILVGLESESTVCYFRFYSIWAASSVKKQIIRRM
KASSFYQTLHGWLCNNCIILKELVFLN

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G007100
[exp]
0 1
AT4G27680 P-loop containing nucleoside t... Potri.012G025351
[exp]
2.44 0.8803
AT1G40390 DNAse I-like superfamily prote... Potri.003G024501
[exp]
3.74 0.8779
AT2G44200 CBF1-interacting co-repressor ... Potri.016G000501
[exp]
3.87 0.8759
AT1G30220 ATINT2 ARABIDOPSIS THALIANA INOSITOL ... Potri.004G133340
[exp]
8.94 0.8368
AT5G17900 microfibrillar-associated prot... Potri.013G065600
[exp]
9.16 0.8717
AT1G23550 SRO2 similar to RCD one 2 (.1) Potri.006G231600
[exp]
9.79 0.8144
AT2G20710 Tetratricopeptide repeat (TPR)... Potri.016G063300
[exp]
12.00 0.8652
AT1G74260 PUR4 purine biosynthesis 4 (.1) Potri.008G058600
[exp]
12.04 0.8668
AT3G18640 C3HZnF Zinc finger C-x8-C-x5-C-x3-H t... Potri.005G061100
[exp]
12.40 0.8475
AT2G17930 Phosphatidylinositol 3- and 4-... Potri.007G057850
[exp]
12.48 0.8485

Potri.008G007100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.