Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G57880 752 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT1G51570 731 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G12970 725 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT5G06850 684 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G11610 670 / 0 NTRB, ATNTRB C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT1G22610 664 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT5G48060 659 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G20080 629 / 0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) AT3G61300 595 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) AT4G00700 584 / 0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G052000 [exp] 783 / 0 AT3G57880 988 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.004G043000 [exp] 781 / 0 AT3G57880 988 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.016G049100 [exp] 762 / 0 AT3G57880 1425 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.006G058900 [exp] 751 / 0 AT3G57880 1372 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.T085601 [exp] 738 / 0 AT5G12970 1315 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.003G210801 [exp] 728 / 0 AT5G12970 1300 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.001G015700 [exp] 726 / 0 AT5G12970 1295 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Potri.014G081700 [exp] 693 / 0 AT4G11610 1422 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Potri.001G271400 [exp] 689 / 0 AT5G48060 1481 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016280 [exp] 750 / 0 AT3G57880 1499 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10012026 [exp] 749 / 0 AT3G57880 1496 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10018839 [exp] 681 / 0 AT4G11610 1348 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10001538 [exp] 675 / 0 AT1G22610 1425 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10033343 [exp] 671 / 0 AT5G12970 821 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1) Lus10021030 [exp] 666 / 0 AT5G06850 1383 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10023823 [exp] 665 / 0 AT5G06850 1382 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10000605 [exp] 663 / 0 AT4G11610 1634 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10011271 [exp] 576 / 0 AT1G04150 1187 / 0.0 C2 calcium/lipid-binding plant phosphoribosyltransferase family protein (.1) Lus10031244 [exp] 526 / 7e-178 AT5G12970 979 / 0.0 Calcium-dependent lipid-binding (CaLB domain) plant phosphoribosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0154 [poplar] [flax] C2 PF00168 [poplar] [flax] C2 C2 domain CL0484 [poplar] [flax] Peroxisome PF08372 [poplar] [flax] PRT_C Plant phosphoribosyltransferase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G007200.2 pacid=42806951 polypeptide=Potri.008G007200.2.p locus=Potri.008G007200 ID=Potri.008G007200.2.v4.1 annot-version=v4.1 ATGCCGCCGAAGCATGACTTCTCTCTCAGGGAGATAAAGCCAAACATTGATGGAGGAAAAACCTTGACTCCCAACATGCTCACCTTGGTTGAACCACTGT ATTTCGTGTATGTAAAAGTTGTGAGAGCCTCCCACTTGCCTTTGAATCAAGCTACTTATGTTGAAGTGAAGAGTGGAAACTATAAGGCAACAACCAAGTA CATTCAAGGTACATTAGCCCCCATTTGGAACCAGGTGTTTGCTTTCAACAAAGATCGTCTTCAAGCGAAGACTATAGAGATTTCGGTGAGGGGTAAGGTA AGTGTGACTAATGAGATAATTGGTAGCATTGAAGTTGGTATAGGTGATATCCCTACTCGGCTTCAGGGGGATTCTTCATTGGCACCACAGTGGTATGGAC TTGAAGATAAGAATGGAGTTTCTGGTAGATCAGGAAATTTGATGTTGGCTATATGGGTGGGGAATCAAGTGGATGATGCCTTTTCACTAGCTTGGCATTT AGACGCAGCATCTGTTAGTGTTGACAAGGTATCTAATGCTCGTCCACAGGTGTACTATTCGCCAAGACTCTGGTATCTTAAAATAAAGGTGAATGGTGCT CAAGATTTGGTAGTTTCGGATCCAAATCGAAAACCTGAAGTTTACGTGAAGGCTACATTGGGGAATAAGGTTTTGAAGACCAAAGTTTCGAAGAACAAGG GTGTGAATCCAAGCTGGAATGAGGAGTTGATGTTTGTTGTAGCTGAGCCATTCGAAGATGCTTTGATTTTGAGTGTGGAAGATGATAAAGGAGATAATAT GGTGGATTATTTGGGGAAGTGTGTTAAGCCTGTGCATAAAATTACTCAGAGACTGTTGCCTCCTCTTCCAAGTGAAGAGATAATCAATCTTGAAAGGTAT GGGGTGGTAGAGGGGCCGATGGAGAAATTCTCGAGTAAGCTTCGTGTCACTATATATTTGGATGGTGTGTATCATGTTTTCGATGAACCTGCTTTATTTA GTACTGATTTGAAGGCATCATCACCCAAACTGACGCCAGGAAAAGTTGGAGATTTGGAGTTAGGAATCTTAAAAGCTGAAGGGTTGGTGCCCATGAAATC CAAGAATGGTTTGAAAACTACTGATGCTTATTGTGTGGCCAAATATGGACCCAAGTGGACAAGAACTAGCACTGTTGTTAGCAGTTTAGAACCAAAATGG ATGAAACAATATCAATGGGATGTTTTGGATCCATGCACAGTGATTGCTATCGGAGTTTTCGACAACAACAATTTACAAGCAGGGGATGGATGGGCAACTG ATAGATTAATTGGCAAGGTAATCAGAATTCGGCTTTCTACACTTGAATTTGGTCGGATATATAAATATGCTTATCCTCTGGTAGCCTTGATGCCTGATGG GGTGAAGAAAATGGGAGAACTTCATTTCACTCTAAGATTTATCTATACTAAAGGTTCTGGTGACAAAATTTATCAATACACGCAGCCTATGCTTCCCAAA CCAGCCTATACAGACCCAATGTCTGTGTACCAAATAGATAGTTTAAGGAACCAGGCTGTTCGTCACATAGCCATGAGACTTGCCCGTGCTGAACCACCAT TAAGAAGAGAGGTGGTGGAGTCTATGTTGAGTGGACGGGGACCTGTATGGAGCATCCGAAGAGGAAAAGCTAATTTCCAGAGAGTGATGGAATGTTTGAA ATTCCTCAAGACAGCTTTGATTTGGCTTGATGACCTACGCCAGTGGAAGAATTCAAGGACGACGATTGTCATGTTTGCAGCGTTTTCAGTTTTTGTATAT TATTCAGAGATCATAATTCCATCTTTCTTTGCCTTCCTCTTCTTGAAAGCTTTGCACAACTATTTCAAGAGGCCTCGAGACATTCTATGTTTGGATACGA ATCTATCACAAGTTGAATCTGTGAATACTTTAGACTGGCAGGAAGAGCTGGACACATTCCCTTCATCTGCGCCATTCGAGGATTTGAGGCTCAGGTATGA CAGATTGAGAGCCATTGGATACAGGATAGAAGAAACAGTAGGCGACTTGGCGACTCAATTGGAGAGGTTTCATGCTATATTTTCATGGAGGGATCGAAGA GCTACTTTAATCTTTACACTCTTCTGCCTAGTCGCTTGGATAATGTTTTACCTCGTGCCTTTCCGGTTGCTTTTTTTCCTTTTTGGCACCTACCTGATGA GGTCTCCAAGATTTCGAGTTACTCTTCCACCGATACCTCAAAATGTATTCAGGAGGTTGCCTTCAAGAGACGATTGCTTGCTTTGA
AA sequence Show only first row Show all	>Potri.008G007200.2 pacid=42806951 polypeptide=Potri.008G007200.2.p locus=Potri.008G007200 ID=Potri.008G007200.2.v4.1 annot-version=v4.1 MPPKHDFSLREIKPNIDGGKTLTPNMLTLVEPLYFVYVKVVRASHLPLNQATYVEVKSGNYKATTKYIQGTLAPIWNQVFAFNKDRLQAKTIEISVRGKV SVTNEIIGSIEVGIGDIPTRLQGDSSLAPQWYGLEDKNGVSGRSGNLMLAIWVGNQVDDAFSLAWHLDAASVSVDKVSNARPQVYYSPRLWYLKIKVNGA QDLVVSDPNRKPEVYVKATLGNKVLKTKVSKNKGVNPSWNEELMFVVAEPFEDALILSVEDDKGDNMVDYLGKCVKPVHKITQRLLPPLPSEEIINLERY GVVEGPMEKFSSKLRVTIYLDGVYHVFDEPALFSTDLKASSPKLTPGKVGDLELGILKAEGLVPMKSKNGLKTTDAYCVAKYGPKWTRTSTVVSSLEPKW MKQYQWDVLDPCTVIAIGVFDNNNLQAGDGWATDRLIGKVIRIRLSTLEFGRIYKYAYPLVALMPDGVKKMGELHFTLRFIYTKGSGDKIYQYTQPMLPK PAYTDPMSVYQIDSLRNQAVRHIAMRLARAEPPLRREVVESMLSGRGPVWSIRRGKANFQRVMECLKFLKTALIWLDDLRQWKNSRTTIVMFAAFSVFVY YSEIIIPSFFAFLFLKALHNYFKRPRDILCLDTNLSQVESVNTLDWQEELDTFPSSAPFEDLRLRYDRLRAIGYRIEETVGDLATQLERFHAIFSWRDRR ATLIFTLFCLVAWIMFYLVPFRLLFFLFGTYLMRSPRFRVTLPPIPQNVFRRLPSRDDCLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G57880			Calcium-dependent lipid-bindin...		Potri.008G007200 [exp]	0	1
AT1G57775			Protein of unknown function (D...		Potri.004G115150 [exp]	94.13	0.4299
AT5G23120		HCF136	HIGH CHLOROPHYLL FLUORESCENCE ...		Potri.005G092950 [exp]	247.39	0.4296

Compare expression of checked genes

Potri.008G007200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.