Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73080 979 / 0 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G17750 941 / 0 AtPEPR2 PEP1 receptor 2 (.1) AT5G63930 594 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 591 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 568 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT3G24240 560 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G48940 552 / 7e-179 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT4G20140 526 / 1e-167 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G56040 518 / 2e-166 Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G34110 512 / 3e-164 Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G009300 [exp] 1320 / 0 AT1G73080 1064 / 0.0 PEP1 receptor 1 (.1) Potri.013G051300 [exp] 577 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 577 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 572 / 0 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.001G053400 [exp] 565 / 0 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.012G022800 [exp] 554 / 1e-179 AT1G73080 582 / 0.0 PEP1 receptor 1 (.1) Potri.003G175700 [exp] 550 / 2e-177 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G174900 [exp] 544 / 3e-176 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G052500 [exp] 543 / 2e-175 AT3G24240 1367 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039030 [exp] 1031 / 0 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10008849 [exp] 583 / 0 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10000509 [exp] 528 / 3e-170 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10023677 [exp] 516 / 2e-165 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10017782 [exp] 513 / 7e-165 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10028612 [exp] 512 / 7e-164 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10011756 [exp] 511 / 4e-163 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10018911 [exp] 506 / 1e-161 AT3G24240 1033 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10000814 [exp] 500 / 2e-160 AT1G08590 1263 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10019248 [exp] 498 / 2e-159 AT5G65700 1479 / 0.0 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G007600.1 pacid=42807139 polypeptide=Potri.008G007600.1.p locus=Potri.008G007600 ID=Potri.008G007600.1.v4.1 annot-version=v4.1 ATGAGTTCTGTTTTGAATCATGTCTTGCTGTTATGTTGGTACTTTGTGTCTGTCTATACCGTGTCTGGCTTGAACTATGATGGGTCGACTCTGTTGTCAC TCTTGAGGCAGTGGAATTCTGTGCCTCCTTCCATAACTTCAAGCTGGAATGCATCAGACTCAACTCCATGTTCTTGGCTAGGTATAGGATGTGATAGTAG AACCCATAGTGTAGTTTCTTTGAACCTCTCTGGTTATGCAACTTCTGGTCAATTGGGACCAGAGATTGGACTCTTAAAGCATTTGAAAACCATCGATTTG CACACCAGTAATTTCTCTGGTGACATACCCTCACAGTTAGGCAATTGTAGTCTACTTGAGCACTTGGATTTGTCCATAAATAGCTTTACTGGAAAAATAC CTGATGGCTTTAAGTACCTTCAAAATTTGCAGTATTTGAGTCTTTCCTTTAATTCACTCTCTGGTGAGATACCTGAGAGTCTAACCAAGCTTGAAAGCCT TGCCGAGTTGCTTCTCGATCATAATAGTCTTGAGGGTAGAATTCCTACAGGTTTCAGCAATTGCAAGAATTTGGACACCTTAGATTTGTCCTTCAATAGC TTTAGTGGGGGTTTCCCTTCAGACCTTGGCAATTTTAGCAGCTTAGCAATCTTGGCCATTATTAATAGTCACTTAAGAGGTGCCATCCCATCTTCCTTTG GCCACCTAAAAAAGCTTTCTTACCTTGACCTCTCCCAGAATCAATTGTCTGGGAGGATTCCTCCTGAACTTGGGGATTGCGAGTCGTTGACGACCTTAAA CTTGTACACAAATCAACTCGAGGGAGAGATTCCGGGTGAATTGGGGAGGCTAAGCAAATTAGAGAACCTGGAATTGTTTGACAATCGCTTGAGTGGTGAA ATTCCTATCAGCATTTGGAAGATTGCAAGTCTTAAGAGCATCTATGTGTACAACAACAGTCTTTCTGGTGAATTACCGCTTGAGATGACTGAGCTCAGGC AACTACAGAATATCTCACTGGCACAAAATCAATTCTACGGGGTCATTCCCCAAACTTTGGGAATCAACAGCAGCTTATTGTGGCTCGATTTCTTTGGCAA TAAGTTCACTGGTGAAATTCCGCCAAATCTTTGCTACGGGCAGCAATTGAGAATTCTTGTTATGGGTTCCAACCAACTTCAAGGCTGCATTCCTTCTGAT GTGGGAGGCTGCCCAACACTCTGGAGATTGACCCTCGAGGAGAACAACCTCTCAGGTACCCTTCCACAGTTCGCAGAAAATCCTATCCTCCTGTACATGG ACATCAGCAAAAATAACATTACAGGCCCAATTCCGCCCAGCATTGGGAATTGTAGTGGTCTCACTTTCATTCGTCTTTCCATGAACAAGCTTACAGGGTC CATACCCTCAGAGCTAGGTAATCTTATAAACCTTCTGGTAGTGGATCTTTCATCCAACCAACTGGAAGGTTCTTTGCCATCTCAGCTGTCAAGGTGTTAC AAATTAGGCGAGTTTGATGTGGGGTTTAATTCACTGAATGGCACAATTCCGTCAAGTTTGAGGAACTGGACGAGCTTATCCACTTTGGTTTTAAGTGAGA ATCATTTTACCGGGGGCATTCCACCTTTTCTGCCAGAACTTGGAATGCTTACAGAGCTACAACTTGGTGGGAATATTCTAGGAGGTGTGATTCCTTCATC CATTGGATCGGTGCGGAGTCTGAAGTATGCCTTGAATCTCAGCAGCAATGGATTCGTCGGAAAACTTCCTTCCGGGCTAGGGAACTTGAAAATGCTTGAA AGACTTGATATATCAAACAATAATCTGACAGGAACTCTAGCAATTCTTGATTATATCCTTTCATGGGACAAGGTCAATGTTTCAAACAATCATTTCACAG GTGCAATACCGGAAACACTGATGGACTTGCTTAACTATTCTCCGTCATCATTCTTGGGCAATCCTGGCCTATGTGTCATGTGTTCTCCATCAAGCCGCAT AGCATGCCCCAAGAACAGAAATTTCTTGCCATGTGACAGTCAAACAAGCAATCAAAATGGACTATCTAAAGTGGCAATCGTAATGATAGCCCTTGCTCCT GTTGCTGCTGTTTCTGTGCTTCTTGGAGTGGTTTACTTGTTTATCAGGCGCAGAAGATATAATCAGGATGTTGAGATCACTTCTCTAGATGGTCCATCTT CACTACTCAACAAGGTGCTGGAAGTTACTGAGAATCTAAATGACAGACATATCATTGGGAGGGGAGCTCATGGAACAGTTTATAAGGCTTCATTGGGAGG AGACAAAATCTTTGCAGTAAAAAAAATTGTATTTGCAGGCCACAAAGAAAGGAACAAAAGCATGGTTAGAGAAATTCAGACCATTGGGAAAATCAAGCAC CGGAATCTGATCAAATTGGAGGAGTTTTGGTTTCAAAAGGACTACGGTCTAATCCTGTATACTTACATGCAAAATGGGAGCCTCTATGATGTCTTACATG GAACCAGAGCACCACCAATCCTGGATTGGGAAATGCGGTATAAGATAGCTATTGGAATTGCACATGGATTGGAATATATCCATTATGATTGTGATCCTCC TATAGTGCATAGAGACATCAAACCAGAAAACATTCTTTTAGACTCTGATATGGAGCCTCATATCTCTGATTTTGGCATAGCTAAGCTAATGGATCAGTCT TCTGCTTCAGCACAGTCCCTCTCTGTTGCGGGAACTATTGGATATATAGCTCCAGAAAACGCATTTACGACAATAAAGATGAAGGAATCTGATGTTTATA GTTATGGGGTTGTTTTGCTTGTGCTTATAACTAGAAAGAAGGCACTGGATCCCTCATTTACGGAGGGAACAGCTATTGTAGGGTGGGTTAGGTCTGTTTG GAACATCACGGAAGACATCAACAGGATTGCTGATTCAAGTCTTGGAGAGGAATTTTTGAGTTCTTACAGCATCAAGGATCAAGTCATTAACGTGCTTTTG ATGGCTTTGAGATGTACTGAAGAAGAGCCTAGCAAAAGACCCTCAATGAGAGATGTTGTCAGGCAATTAGTAAAAGCAAACGATCGCAGAAGGAGGAGGT GA
AA sequence Show only first row Show all	>Potri.008G007600.1 pacid=42807139 polypeptide=Potri.008G007600.1.p locus=Potri.008G007600 ID=Potri.008G007600.1.v4.1 annot-version=v4.1 MSSVLNHVLLLCWYFVSVYTVSGLNYDGSTLLSLLRQWNSVPPSITSSWNASDSTPCSWLGIGCDSRTHSVVSLNLSGYATSGQLGPEIGLLKHLKTIDL HTSNFSGDIPSQLGNCSLLEHLDLSINSFTGKIPDGFKYLQNLQYLSLSFNSLSGEIPESLTKLESLAELLLDHNSLEGRIPTGFSNCKNLDTLDLSFNS FSGGFPSDLGNFSSLAILAIINSHLRGAIPSSFGHLKKLSYLDLSQNQLSGRIPPELGDCESLTTLNLYTNQLEGEIPGELGRLSKLENLELFDNRLSGE IPISIWKIASLKSIYVYNNSLSGELPLEMTELRQLQNISLAQNQFYGVIPQTLGINSSLLWLDFFGNKFTGEIPPNLCYGQQLRILVMGSNQLQGCIPSD VGGCPTLWRLTLEENNLSGTLPQFAENPILLYMDISKNNITGPIPPSIGNCSGLTFIRLSMNKLTGSIPSELGNLINLLVVDLSSNQLEGSLPSQLSRCY KLGEFDVGFNSLNGTIPSSLRNWTSLSTLVLSENHFTGGIPPFLPELGMLTELQLGGNILGGVIPSSIGSVRSLKYALNLSSNGFVGKLPSGLGNLKMLE RLDISNNNLTGTLAILDYILSWDKVNVSNNHFTGAIPETLMDLLNYSPSSFLGNPGLCVMCSPSSRIACPKNRNFLPCDSQTSNQNGLSKVAIVMIALAP VAAVSVLLGVVYLFIRRRRYNQDVEITSLDGPSSLLNKVLEVTENLNDRHIIGRGAHGTVYKASLGGDKIFAVKKIVFAGHKERNKSMVREIQTIGKIKH RNLIKLEEFWFQKDYGLILYTYMQNGSLYDVLHGTRAPPILDWEMRYKIAIGIAHGLEYIHYDCDPPIVHRDIKPENILLDSDMEPHISDFGIAKLMDQS SASAQSLSVAGTIGYIAPENAFTTIKMKESDVYSYGVVLLVLITRKKALDPSFTEGTAIVGWVRSVWNITEDINRIADSSLGEEFLSSYSIKDQVINVLL MALRCTEEEPSKRPSMRDVVRQLVKANDRRRRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.008G007600 [exp]	0	1
AT3G11080		AtRLP35	receptor like protein 35 (.1)		Potri.012G013435 [exp]	8.83	0.8394
AT4G31980			unknown protein		Potri.003G208001 [exp]	14.69	0.7456
AT5G45160			Root hair defective 3 GTP-bind...		Potri.012G117300 [exp]	17.77	0.8253
AT4G31980			unknown protein		Potri.003G206801 [exp]	23.23	0.8173
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G134601 [exp]	23.81	0.7946
AT3G50950		ZAR1	HOPZ-ACTIVATED RESISTANCE 1 (....		Potri.013G056000 [exp]	25.09	0.6983
AT5G40990		GLIP1	GDSL lipase 1 (.1)		Potri.017G134701 [exp]	27.49	0.7906
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.001G294100 [exp]	27.60	0.8147
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120000 [exp]	31.87	0.7935
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Potri.016G024400 [exp]	35.66	0.6748

Compare expression of checked genes

Potri.008G007600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.