Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 771 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 722 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 706 / 0 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 700 / 0 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 691 / 0 EFR EF-TU receptor (.1) AT2G24130 443 / 1e-139 Leucine-rich receptor-like protein kinase family protein (.1) AT5G46330 433 / 4e-134 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 389 / 6e-119 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G39390 362 / 8e-115 Leucine-rich repeat protein kinase family protein (.1) AT4G20140 378 / 2e-113 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102800 [exp] 966 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 947 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 945 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 939 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 939 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 935 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 927 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 911 / 0 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 907 / 0 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011386 [exp] 895 / 0 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 892 / 0 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 885 / 0 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 883 / 0 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 880 / 0 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 876 / 0 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 874 / 0 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030638 [exp] 869 / 0 AT3G47570 771 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 863 / 0 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 857 / 0 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G007866.1 pacid=42806010 polypeptide=Potri.008G007866.1.p locus=Potri.008G007866 ID=Potri.008G007866.1.v4.1 annot-version=v4.1 AATGAGACAGATCAACTGGCTCTGGTTGAATTCAAGACCCATATAACCAATGACCCTCTTGGTGTTTTGAGATCGTGGAATAACTCAATACATTTCTGCC AATGGCATGGCGTTCTTTGCGGTCGCCGGCATCAAAGGGTCATAGCATTGGATTTAGGGTCCTATAAACTAGCCGGGTACATATCACCTCATGTCGGAAA TTTAAGCTTCTTGAGACTATTAGATCTAAGAAACAATAGTCTTAGCCAAGAAATACCACCTGAATTAGGCAATTTATCAAGGCTAAAATACTTGTATCTA AATAACAATTCGCTCAGTGGCGAAATTCCTTCCAATGTTTCCTTTTGCTTCAACCTCATTCACTTTCTTGTTAATTGGAACCGGCTGGTAGGGAAAATTC CTGCTGAGTTTGCTACCTTGTCAAAGCTTGAGATGTTTTTCATTCATGCCAACAATCTCACAGGAGGAATCCCTATCACATTTGGTAACTTGACATCTCT TCAGAGATTTTCTGCCACTCAAAATTATATCGGCGGTAGTATCCCTGCTACTATTGGAAAACTGGCAAGTCTCACACATATCGCTCTGAGTGGTAATAGG TTGTCAGGTTCAATCCCTCCTTCATTCTTCAATCTCTCTTCTATCATAGCTTTTGATATTGCATACAATCAACTTGAAGGAACTCTTCCTTCAAACTTAG GCATCACTCTTCCCAATCTGCAAACTCTTGGCCTTAGTGCTAACCAATTTACTGGCTCTATTCCTTTTACAATATCTAATGCAACAAATCTGGAATACCT TGCAAGCAACGACAACAGACATACTGGATCAGTACCTACTTTAGAAAGGTTGAATAGGCTAGGGTTCTTAAGCTTAACCTCCAACCATCTTGGAAGTGGA AGAACTAGTGATTTGGACTTTTTGCGGTCTTTGCTCAATGCCACTTACTTAGAGATCTTGGCTCTAAATGATAACAACTTTGGTGGGATATTTCCTGAAT TTATTGGGAACTTCACTTGGCTTACAATTTTGTTTCTAGATGGCAATAGAATATCTGGAAGCATCCCAAATGGGATACAGAATCTGTTAGCTATTTGGAG AATGGAGCTGTGGGAGAACCAAATATCAGGTGGTATCCCCCCTGAGATTGGACATCTTCAACAGCTAGATAGGCTAAGGCTGTCGGGAAACAGATTATCA GGTAACATTCCGTCCTCTCTAGGAAATCTGACTAGTTTAACTTCTCTTTATTTAGGACAAAATAATCTCCAAGGTAGTATCCCCTCAAGTTTAGGCTTAT GCGAGAATTTGCTTGAATTGGATCTTTCTCAAAACAATCTGAGTGGCACCATACCCAAAGAACTTGTCAGCCTCTCAGCGTTATCCATTTTTATGAATTT GTCTCACAACTTCTTGAATGGTTACCTTCCACAAGAAGTTGGAAATTTGAAAAACTTAGGTGCTTTGGATGTCTCTGATAACATGTTATCTGGTAAAATT CCTACAAGTCTTGGCAGCTGCGTTACATTGGAAATCCTACGCATGCAAAGAAACTTCTTATCAGGGGAATTGCCTTCATCTTTGAGGTCTTTGAAAGGCA TTCGGATGTTAGATCTTTCTCGCAACAATTTAACAGGCCAGCTCCCAAAATTTCTCGAGCAGTTCGACTTGCAGTACTTGAATCTGTCTTTCAATGATTT CGATGGTGAGATGCTCCTACAAGGTGTCTTCAAGAATGCAAGCGTGGTTTCGGTAGAAGGGAACAGTAGGCTCTGTGGGGGTGTTCCAGAACTACAGTTA CCGCCTTGCAAGTTTCAGAATTCCACTAAAGGGAGGCTGGCCCTTAAGTTCAAGATAATAATCTCTGTTGTGTTTGGGGTCCTAGGAGTAACTACTCTGT TGTCTACACTATACTTCTGTTGGTTAAGGAAGAAAGGAAAGGGACCTGACTTGAGCAATTCAGAAAACTCGACTTTGCGACTTTCTTATCAAAGTCTCGT TGCCGCTACTGATGGGTTTTCTTCAGCTCATTTGATTGGAGAAGGCAGCTTTGGGTCTGTGTATAAAGGAGTGATCGACGAGTTGGGAACTACAGTTGCC ATCAAAGTACTCAACCTTCTTCGACGAGGAGCTCCCAAGAGTTTTGCAGCCGAGTGTGAGGCCTTAAGAAACATAAGGCATCGCAACCTTGTCAAGATAC TGACAGCATGTTCTGGTGTTGATTACAAAGGTAATGACTTCAAGGCTTTGATTTATGAGTTTATGGTCAATGGCAGCCTAGAGAAGTGGCTACATCCAAC TCCCATAACAGATGAGGTGAATGAGGCACCAAGGAGCTTAAATCTTCTTCAGAGACTAAACATTGCGATTGATGTTGCTTCTGCACTGGAATATCTTCAC AAAGACTGTCAACCACCTGTAGTTCATTGTGATCTCAAACCAAGCAATATTCTTCTAGATGAGGATATGACTGCACATGTTGGTGACTTTGGAATAGCCA GAATCCTTCCAGAAGCAGCCATGGACTTGTCCAATAATGTGACCAGTTCTATTGGAGTAAGAGGAACTACGGGATATACAGCTCCAGAATATGGTATGGG AAATGAGGTGTCAACATATGGTGATGTTTACAGCTACGGAGTCCTTCTTTTGGAGATGTTCACTGGAAAGAGACCTACAAATGACATGTTCAAAGACAGT TTGAGCCTTAGTAGGTTTGTTAAGGCAGCTCTGCCTATGCAAGTCTTAGAAATTGCAGATCCAATACTTGTTCAAGAAGTGGAAGGAAAGACTAGTGTAA ACACTCCTCACGGTCACAGAAGAGAAAGTGGTCGCAGAATTCAGGAGTGCTTGGCTTCAATATTTACAATCGGAGTTGCTTGTTCTGAGGAAATTCCAAG AGAAAGAAAGGGCATCAGTAATGTTGTTACTGAACTGCATTCAATCAGAAACAAACTC
AA sequence Show only first row Show all	>Potri.008G007866.1 pacid=42806010 polypeptide=Potri.008G007866.1.p locus=Potri.008G007866 ID=Potri.008G007866.1.v4.1 annot-version=v4.1 NETDQLALVEFKTHITNDPLGVLRSWNNSIHFCQWHGVLCGRRHQRVIALDLGSYKLAGYISPHVGNLSFLRLLDLRNNSLSQEIPPELGNLSRLKYLYL NNNSLSGEIPSNVSFCFNLIHFLVNWNRLVGKIPAEFATLSKLEMFFIHANNLTGGIPITFGNLTSLQRFSATQNYIGGSIPATIGKLASLTHIALSGNR LSGSIPPSFFNLSSIIAFDIAYNQLEGTLPSNLGITLPNLQTLGLSANQFTGSIPFTISNATNLEYLASNDNRHTGSVPTLERLNRLGFLSLTSNHLGSG RTSDLDFLRSLLNATYLEILALNDNNFGGIFPEFIGNFTWLTILFLDGNRISGSIPNGIQNLLAIWRMELWENQISGGIPPEIGHLQQLDRLRLSGNRLS GNIPSSLGNLTSLTSLYLGQNNLQGSIPSSLGLCENLLELDLSQNNLSGTIPKELVSLSALSIFMNLSHNFLNGYLPQEVGNLKNLGALDVSDNMLSGKI PTSLGSCVTLEILRMQRNFLSGELPSSLRSLKGIRMLDLSRNNLTGQLPKFLEQFDLQYLNLSFNDFDGEMLLQGVFKNASVVSVEGNSRLCGGVPELQL PPCKFQNSTKGRLALKFKIIISVVFGVLGVTTLLSTLYFCWLRKKGKGPDLSNSENSTLRLSYQSLVAATDGFSSAHLIGEGSFGSVYKGVIDELGTTVA IKVLNLLRRGAPKSFAAECEALRNIRHRNLVKILTACSGVDYKGNDFKALIYEFMVNGSLEKWLHPTPITDEVNEAPRSLNLLQRLNIAIDVASALEYLH KDCQPPVVHCDLKPSNILLDEDMTAHVGDFGIARILPEAAMDLSNNVTSSIGVRGTTGYTAPEYGMGNEVSTYGDVYSYGVLLLEMFTGKRPTNDMFKDS LSLSRFVKAALPMQVLEIADPILVQEVEGKTSVNTPHGHRRESGRRIQECLASIFTIGVACSEEIPRERKGISNVVTELHSIRNKL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G47570			Leucine-rich repeat protein ki...		Potri.008G007866 [exp]	0	1
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Potri.008G183000 [exp]	2.23	0.9516
AT1G62770			Plant invertase/pectin methyle...		Potri.001G119200 [exp]	3.87	0.9535
AT1G03670			ankyrin repeat family protein ...		Potri.013G133700 [exp]	4.79	0.9599
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025100 [exp]	7.34	0.9433
AT3G04480			endoribonucleases (.1)		Potri.013G047400 [exp]	8.00	0.9263
AT1G03670			ankyrin repeat family protein ...		Potri.013G133800 [exp]	10.00	0.9408
AT4G27220			NB-ARC domain-containing disea...		Potri.019G020102 [exp]	14.42	0.9487
AT5G16990			Zinc-binding dehydrogenase fam...		Potri.017G002600 [exp]	14.49	0.9444
					Potri.018G119100 [exp]	16.67	0.8890
AT1G53430			Leucine-rich repeat transmembr...		Potri.010G155800 [exp]	17.72	0.9086

Compare expression of checked genes

Potri.008G007866 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.