Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G29905 54 / 9e-12 unknown protein AT5G57123 53 / 4e-11 unknown protein AT5G10695 49 / 9e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007800 [exp] 138 / 6e-45 AT4G29905 54 / 1e-11 unknown protein Potri.010G251000 [exp] 117 / 1e-36 AT5G10695 39 / 1e-05 unknown protein Potri.018G140500 [exp] 60 / 7e-14 AT5G57123 99 / 1e-29 unknown protein Potri.006G073400 [exp] 59 / 2e-13 AT5G57123 97 / 8e-29 unknown protein Potri.018G007300 [exp] 54 / 2e-11 AT5G10695 102 / 6e-31 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026229 [exp] 51 / 2e-10 AT5G10695 107 / 1e-32 unknown protein Lus10042440 [exp] 51 / 2e-10 AT5G10695 107 / 1e-32 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G007932.1 pacid=42808110 polypeptide=Potri.008G007932.1.p locus=Potri.008G007932 ID=Potri.008G007932.1.v4.1 annot-version=v4.1 ATGGGGGCGATGCAAATATTTGATGTCCGAGACAAGTTGACAAGAAAAGAAGAGGCAAGATCACTATGTCCATGCAGTGGAGGGCCAGTGATGGCAATGG ATTATGACTCACATTTATACTTCTGTTTCATCCCAATCTCCCACAAAGTCAAGAGGAAGTTTTCCTGCGTTGTCTGCTCCAGACGACTGGTTCTTGTTCA GTGA
AA sequence Show only first row Show all	>Potri.008G007932.1 pacid=42808110 polypeptide=Potri.008G007932.1.p locus=Potri.008G007932 ID=Potri.008G007932.1.v4.1 annot-version=v4.1 MGAMQIFDVRDKLTRKEEARSLCPCSGGPVMAMDYDSHLYFCFIPISHKVKRKFSCVVCSRRLVLVQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G29905			unknown protein		Potri.008G007932 [exp]	0	1
AT4G29905			unknown protein		Potri.008G007800 [exp]	1.00	0.8124
AT4G11260		RPR1, ETA3, EDM...	ENHANCER OF TIR1-1 AUXIN RESIS...		Potri.004G071100 [exp]	15.09	0.7296
AT1G20780		ATPUB44, SAUL1	ARABIDOPSIS THALIANA PLANT U-B...		Potri.010G079200 [exp]	20.34	0.7606
					Potri.001G142150 [exp]	23.68	0.6864
AT5G10870		ATCM2	chorismate mutase 2 (.1)		Potri.018G019250 [exp]	23.81	0.6948
AT4G17230	GRAS	SCL13	SCARECROW-like 13 (.1)		Potri.016G009700 [exp]	27.27	0.7069
AT3G58040		SINAT2	seven in absentia of Arabidops...		Potri.016G059700 [exp]	28.28	0.6499
AT4G17500	AP2_ERF	ATERF-1, AtERF1	ethylene responsive element bi...		Potri.003G150700 [exp]	37.41	0.7007
AT5G57150	bHLH	bHLH035	basic helix-loop-helix (bHLH) ...		Potri.006G074900 [exp]	41.56	0.6754
AT3G25730	AP2_ERF	EDF3	ethylene response DNA binding ...		Potri.004G220700 [exp]	45.27	0.6874

Compare expression of checked genes

Potri.008G007932 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.