Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G51630 599 / 0 O-fucosyltransferase family protein (.1) AT3G21190 582 / 0 O-fucosyltransferase family protein (.1) AT1G38065 107 / 3e-25 O-fucosyltransferase family protein (.1) AT1G38131 107 / 4e-25 O-fucosyltransferase family protein (.1) AT1G76270 98 / 6e-22 O-fucosyltransferase family protein (.1) AT4G38390 96 / 3e-21 RHS17 root hair specific 17 (.1) AT2G01480 96 / 3e-21 O-fucosyltransferase family protein (.1) AT3G26370 96 / 4e-21 O-fucosyltransferase family protein (.1) AT1G04910 96 / 5e-21 O-fucosyltransferase family protein (.1) AT1G20550 93 / 3e-20 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G250600 [exp] 804 / 0 AT1G51630 588 / 0.0 O-fucosyltransferase family protein (.1) Potri.003G077500 [exp] 112 / 2e-26 AT4G16650 785 / 0.0 O-fucosyltransferase family protein (.1) Potri.001G157400 [exp] 109 / 1e-25 AT4G16650 773 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 109 / 1e-25 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 109 / 1e-25 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 105 / 2e-24 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G011100 [exp] 103 / 1e-23 AT1G76270 759 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G090600 [exp] 102 / 2e-23 AT1G14020 776 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G249900 [exp] 102 / 3e-23 AT1G76270 776 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037328 [exp] 629 / 0 AT1G51630 556 / 0.0 O-fucosyltransferase family protein (.1) Lus10035749 [exp] 628 / 0 AT1G51630 555 / 0.0 O-fucosyltransferase family protein (.1) Lus10012270 [exp] 110 / 5e-26 AT1G76270 758 / 0.0 O-fucosyltransferase family protein (.1) Lus10028957 [exp] 107 / 6e-25 AT4G16650 771 / 0.0 O-fucosyltransferase family protein (.1) Lus10023948 [exp] 106 / 2e-24 AT1G20550 697 / 0.0 O-fucosyltransferase family protein (.1) Lus10007481 [exp] 105 / 3e-24 AT4G16650 766 / 0.0 O-fucosyltransferase family protein (.1) Lus10004729 [exp] 105 / 4e-24 AT4G16650 756 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 103 / 5e-24 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10007792 [exp] 103 / 1e-23 AT4G16650 751 / 0.0 O-fucosyltransferase family protein (.1) Lus10013234 [exp] 103 / 2e-23 AT1G76270 791 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.008G008300.1 pacid=42808146 polypeptide=Potri.008G008300.1.p locus=Potri.008G008300 ID=Potri.008G008300.1.v4.1 annot-version=v4.1 ATGGGTGTGGATTTGAGACAAGTGGTTGCCGGGGTGCTGACGCTAACTATGTTTGTGATGCTTGGTAACATGATCAAGAGAGACCATTTTGATTCTGTTG AAGGGAAATTTCCAGGAGTTAGGGACGTCGAGTTTGATAGCGAGAAGGTTTCAGATCAGGGTCTTGTGACATTTTCCAAAAAGAGTACAAATGGGCCATG GATTGAGAGCGGCCAAGAGCTAAAACCATGTTGGAAAGAGTCAACTTTAGATGAGGTAGAGCCAAAAGGGTTTGTCACTTTGTCATTAACTAATGGTCCT GAGTACCACGTCTCACAGATTGCTGATGCAGTGGTGGTAGCAAGATATATTGGAGCAACTCTCGTACTTCCTGACATTAGGGGAAGCAAACCAGGAGATG AAAGGAAATTTGAAGAAATATATGATGTTGATAAATTTGTGAAAAGCCTGGATGGGGTGGTTAAAGTAGTTAAAGGTCTGCCTGATGATGTATCGATTCG AGATTTTGCTGTTGTCAAGGTCCCTAATCGAATTTCAGATGATCACATTGCTGAGCAAATCAAACCAGTCTTTAAAACAAATAGCAACATAAGACTGGCT ACTTTCTTCCCTTCAGTAAATATGAGAAAGACCACAAAAACAAGTGCCAGTGATTCAGTTGCATGTTTGGCGATGTTTGGAACTTTACAGTTGCAGCCAG AGGTTAATGAAGTGGTTGACTCCATGATTGAGAGGCTAAGAACTTTGAGTCGCAAGTCTAATGGACAATTTATTGCCGTGGACTTGAGAGTTGAGATATT GGAAAAAAAAGGTTGCCATGGAAGCAGTTCAGCTGGAACAAAAAGCTGTTTTAGTGCCCAGGAGATTGCTATATTTTTGAGGAAAATGGGATTTGACAAG GATACCACAATCTACCTCACTCAGCCTAGATGGGACGAAAGCCTTGATGTTCTGAAGGATATATTCCCTAAAACTTATACTAAGGAAAGCATAATGCCTG CTGACAAAAAGGCAAAATTCCTCGAATCAGAAGACTCAGAGTTCGAGAAGGTTATTGACTTCTACATGTGCTCTCAGAGTGATGTCTTTGTACCAGCCAT CTCTGGCCTATTTTATGCCAATGTTGCTGGTAAGAGAATAGCATCTGGCAAGACTCAAATACTCGTTCCGTCTGACATTCCGGGCTCCTCTGCCGCTGTC ACCAGCCATTTCTCCCCCTATATTTCCAAGAAGAACCACATGGCACATTCCTGTTATTGCAAGTAA
AA sequence Show only first row Show all	>Potri.008G008300.1 pacid=42808146 polypeptide=Potri.008G008300.1.p locus=Potri.008G008300 ID=Potri.008G008300.1.v4.1 annot-version=v4.1 MGVDLRQVVAGVLTLTMFVMLGNMIKRDHFDSVEGKFPGVRDVEFDSEKVSDQGLVTFSKKSTNGPWIESGQELKPCWKESTLDEVEPKGFVTLSLTNGP EYHVSQIADAVVVARYIGATLVLPDIRGSKPGDERKFEEIYDVDKFVKSLDGVVKVVKGLPDDVSIRDFAVVKVPNRISDDHIAEQIKPVFKTNSNIRLA TFFPSVNMRKTTKTSASDSVACLAMFGTLQLQPEVNEVVDSMIERLRTLSRKSNGQFIAVDLRVEILEKKGCHGSSSAGTKSCFSAQEIAIFLRKMGFDK DTTIYLTQPRWDESLDVLKDIFPKTYTKESIMPADKKAKFLESEDSEFEKVIDFYMCSQSDVFVPAISGLFYANVAGKRIASGKTQILVPSDIPGSSAAV TSHFSPYISKKNHMAHSCYCK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G51630			O-fucosyltransferase family pr...		Potri.008G008300 [exp]	0	1
AT5G12470			Protein of unknown function (D...		Potri.009G051800 [exp]	1.41	0.7944
AT5G17920		ATCIMS, ATMETS,...	methionine synthesis 1, COBALA...		Potri.013G061800 [exp]	1.73	0.8389	Pt-CIMS.2
AT5G05170		IXR1, CEV1, ATH...	ISOXABEN RESISTANT 1, CONSTIT...		Potri.006G052600 [exp]	3.00	0.7888	CESA4.1
AT1G11790		AtADT1, ADT1	Arabidopsis thaliana arogenate...		Potri.011G004700 [exp]	5.00	0.7675
AT2G43070		ATSPPL3	ARABIDOPSIS THALIANA SIGNAL PE...		Potri.014G150000 [exp]	6.32	0.6769
AT4G36750			Quinone reductase family prote...		Potri.005G126200 [exp]	7.34	0.7512
AT3G55030		PGPS2	phosphatidylglycerolphosphate ...		Potri.010G214900 [exp]	11.40	0.6949
AT1G19190			alpha/beta-Hydrolases superfam...		Potri.004G142800 [exp]	11.66	0.7751
AT4G30710		QWRF8	QWRF domain containing 8, Fami...		Potri.018G103800 [exp]	13.85	0.7550
AT3G62660		GATL7	galacturonosyltransferase-like...		Potri.002G200200 [exp]	14.14	0.7536

Compare expression of checked genes

Potri.008G008300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.