Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48750 293 / 4e-99 CDKA1, CDC2A, CDKA;1, CDC2AAT, CDK2 cell division control 2 (.1) AT1G20930 233 / 2e-75 CDKB2;2 cyclin-dependent kinase B2;2 (.1) AT2G38620 233 / 3e-75 CDKB1;2 cyclin-dependent kinase B1;2 (.1.2) AT1G76540 231 / 1e-74 CDKB2;1 cyclin-dependent kinase B2;1 (.1) AT3G54180 227 / 6e-73 CDC2B, CDKB1;1 CDC2-LIKE GENE, cyclin-dependent kinase B1;1 (.1) AT1G73690 196 / 6e-60 CDKD1;1, AT;CDKD;1, CAK3AT cyclin-dependent kinase D1;1 (.1) AT1G67580 197 / 1e-57 CDKG;2 Protein kinase superfamily protein (.1.2) AT1G66750 186 / 1e-56 CDKD1;2, CAK4AT, AT;CDKD;2, CDKD;2 CYCLIN-DEPENDENT KINASE D1;2, CDK-activating kinase 4 (.1) AT5G63370 186 / 2e-55 CDKG;1 Protein kinase superfamily protein (.1.2.3.4) AT1G18040 183 / 4e-55 CDKD1;3, AT;CDCKD;3, CAK2AT cyclin-dependent kinase D1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G133500 [exp] 292 / 1e-98 AT3G48750 540 / 0.0 cell division control 2 (.1) Potri.016G142800 [exp] 242 / 6e-79 AT2G38620 536 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.006G113200 [exp] 234 / 2e-75 AT2G38620 545 / 0.0 cyclin-dependent kinase B1;2 (.1.2) Potri.005G257500 [exp] 228 / 3e-73 AT1G76540 552 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.002G003400 [exp] 224 / 1e-71 AT1G76540 553 / 0.0 cyclin-dependent kinase B2;1 (.1) Potri.015G092100 [exp] 205 / 9e-61 AT1G67580 588 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G094600 [exp] 197 / 3e-58 AT1G67580 574 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G056900 [exp] 193 / 7e-56 AT1G67580 864 / 0.0 Protein kinase superfamily protein (.1.2) Potri.012G052100 [exp] 186 / 1e-55 AT1G18040 562 / 0.0 cyclin-dependent kinase D1;3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021611 [exp] 234 / 2e-75 AT1G76540 531 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10040593 [exp] 232 / 6e-75 AT1G76540 534 / 0.0 cyclin-dependent kinase B2;1 (.1) Lus10038755 [exp] 229 / 1e-74 AT3G48750 468 / 7e-169 cell division control 2 (.1) Lus10038754 [exp] 201 / 4e-63 AT3G48750 407 / 2e-144 cell division control 2 (.1) Lus10003236 [exp] 199 / 2e-61 AT2G38620 493 / 2e-176 cyclin-dependent kinase B1;2 (.1.2) Lus10035614 [exp] 193 / 3e-59 AT2G38620 485 / 1e-173 cyclin-dependent kinase B1;2 (.1.2) Lus10015816 [exp] 194 / 3e-56 AT1G67580 892 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036995 [exp] 194 / 4e-56 AT1G67580 897 / 0.0 Protein kinase superfamily protein (.1.2) Lus10026790 [exp] 186 / 5e-55 AT5G10270 675 / 0.0 cyclin-dependent kinase C;1 (.1) Lus10036106 [exp] 186 / 7e-55 AT5G10270 689 / 0.0 cyclin-dependent kinase C;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.008G008400.2 pacid=42807344 polypeptide=Potri.008G008400.2.p locus=Potri.008G008400 ID=Potri.008G008400.2.v4.1 annot-version=v4.1 ATGGATCAGCCACGGTATCAGCATTGCAGGTGGATTGGTGCAGGAGCTTTTGGTAAGGTGTACCAGGCTATCGACACCAAAATCAACTGCGTTGTAGCTT TGAAGCTTACAGAGCTTGAAGGTGATGGTAATGATGGAGGTGTACCGGCTGTGTCACTCAGAGAGATGTCCGTCCTGAAGGAGATGGACCATGAAAACAT TATTAAGTTGTTGGATGTGGTGCACCAAGATGGCAAGAGATTGACTCTAGTTTTTGAATTTATGGATGGAGATTTGCTCGAATTTATGAAAGCACATCCA GATCGTTTCAGTGATTCAAATCTAATCAAAAGACTCCTTGGTCAAATTCTCTCTGCTGTTGATCATTGTCATTCTCGAAGGGTTTTCCATCGAGATTTGA AACCAGCAAATTTGCTAGTAAATCAGAAAAATTACACACTGAAAGTTGCTGATTTCGGATTGGCTAAAGCATTCAGCATTCCACAAAAAAAATGCACGCC TCAGTGCATAACGCTTGCGTACAGAGCACCAGAAGTATTGCTGGGATCAACAGAACATTATGTTGCTGCTGATATGTGGTCGGTAGGATGCATATTTGCT GAGATGGTGAATCAGGAGCGATTGTTTGATACCGTGAATTTGAAGAGGGATCCTGATAGAGATTTTAAGAAGGAGCAATTGAGCTTAATTTTCAGTATAC TGGGTACTCCAGAGCAGGATTCGTTTATTGGAATCACTTTTCCTGATTGTCTATCTAACTTCCCAGAGCATCAGCCTCCGGAACTGAGAGTTGTTGTTCC AACACTTGGATCAACTGGAATCGACCTTCTTTCGAAAATGCTATGCTTGGATCCTGAAAGAAGAATAACCGCTGCTGCTGCGCTTCGTCATGAGTACTTC CGGGATATTGCAGGGCATTAA
AA sequence Show only first row Show all	>Potri.008G008400.2 pacid=42807344 polypeptide=Potri.008G008400.2.p locus=Potri.008G008400 ID=Potri.008G008400.2.v4.1 annot-version=v4.1 MDQPRYQHCRWIGAGAFGKVYQAIDTKINCVVALKLTELEGDGNDGGVPAVSLREMSVLKEMDHENIIKLLDVVHQDGKRLTLVFEFMDGDLLEFMKAHP DRFSDSNLIKRLLGQILSAVDHCHSRRVFHRDLKPANLLVNQKNYTLKVADFGLAKAFSIPQKKCTPQCITLAYRAPEVLLGSTEHYVAADMWSVGCIFA EMVNQERLFDTVNLKRDPDRDFKKEQLSLIFSILGTPEQDSFIGITFPDCLSNFPEHQPPELRVVVPTLGSTGIDLLSKMLCLDPERRITAAAALRHEYF RDIAGH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48750		CDKA1, CDC2A, C...	cell division control 2 (.1)		Potri.008G008400 [exp]	0	1
					Potri.014G092050 [exp]	2.44	0.8206
AT2G32645			Domain of unknown function (DU...		Potri.011G139000 [exp]	6.00	0.7123
					Potri.001G178950 [exp]	6.70	0.7548
AT3G27120			P-loop containing nucleoside t...		Potri.001G331300 [exp]	7.74	0.7851
AT4G25950		VATG3	vacuolar ATP synthase G3 (.1)		Potri.019G080700 [exp]	13.96	0.6875
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G031000 [exp]	15.74	0.7159
					Potri.018G142201 [exp]	16.73	0.6442
AT1G67670			unknown protein		Potri.010G054700 [exp]	17.14	0.7214
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.005G122550 [exp]	21.23	0.6947
					Potri.015G072732 [exp]	32.17	0.6674

Compare expression of checked genes

Potri.008G008400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.