Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G47230 54 / 1e-08 CYCA3;4 CYCLIN A3;4 (.1.2) AT5G43080 50 / 3e-07 CYCA3;1 Cyclin A3;1 (.1) AT1G47220 46 / 8e-06 CYCA3;3 Cyclin A3;3 (.1) AT1G47210 46 / 1e-05 CYCA3;2 cyclin-dependent protein kinase 3;2 (.1.2) AT5G06150 41 / 0.0005 CYC1BAT, CYCB1;2 cyclin B 1;2, Cyclin family protein (.1) AT3G11520 40 / 0.0005 CYC2, CYCB1;3 CYCLIN 2, CYCLIN B1;3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G021100 [exp] 45 / 2e-05 AT1G47230 484 / 2e-172 CYCLIN A3;4 (.1.2) Potri.002G080000 [exp] 45 / 2e-05 AT1G44110 593 / 0.0 Cyclin A1;1 (.1) Potri.002G121500 [exp] 44 / 4e-05 AT1G47230 472 / 1e-167 CYCLIN A3;4 (.1.2) Potri.005G181400 [exp] 44 / 4e-05 AT1G44110 589 / 0.0 Cyclin A1;1 (.1) Potri.005G251400 [exp] 42 / 0.0003 AT1G76310 539 / 0.0 CYCLIN B2;4 (.1) Potri.006G247200 [exp] 40 / 0.0008 AT5G11300 494 / 3e-173 CYCLIN A2;2, mitotic-like cyclin 3B from Arabidopsis (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024822 [exp] 48 / 2e-06 AT1G47230 452 / 5e-159 CYCLIN A3;4 (.1.2) Lus10018715 [exp] 48 / 3e-06 AT1G47230 449 / 6e-158 CYCLIN A3;4 (.1.2) Lus10013886 [exp] 47 / 4e-06 AT5G43080 283 / 2e-93 Cyclin A3;1 (.1) Lus10028544 [exp] 47 / 6e-06 AT1G44110 476 / 4e-167 Cyclin A1;1 (.1) Lus10042739 [exp] 45 / 2e-05 AT1G44110 508 / 1e-177 Cyclin A1;1 (.1) Lus10029700 [exp] 44 / 5e-05 AT1G44110 544 / 0.0 Cyclin A1;1 (.1) Lus10039033 [exp] 42 / 0.0003 AT5G06150 436 / 1e-150 cyclin B 1;2, Cyclin family protein (.1) Lus10014199 [exp] 41 / 0.0005 AT1G44110 451 / 2e-157 Cyclin A1;1 (.1) Lus10026598 [exp] 40 / 0.001 AT5G43080 243 / 9e-80 Cyclin A3;1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0065 [poplar] [flax] Cyclin PF00134 [poplar] [flax] Cyclin_N Cyclin, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.008G008551.1 pacid=42808802 polypeptide=Potri.008G008551.1.p locus=Potri.008G008551 ID=Potri.008G008551.1.v4.1 annot-version=v4.1 ATGCTTATTCTGATGTTTCTTTTTGCTCCCTGCAGGTCTTCTCAGTCTTTGCTTTCCTGCGTCTTGGTTGGGTTTGCAGGGAGTTCATCAGTCTCTATTG TGTGCTGTGAGTTGCTTCGGCTTCGAAGAAACATGGACGAGCAAGAGAGCTCGAAGAAGAGAGAGCCGTTGTCCACGATGGAAGAGGAGCGGCCTTCCAA GGTGCAGAAAAATGAAGATCTGACCGCACCAGAGGAGATTGACAACAGGGTTATCGAATATCTCTATGGAATGGAGGAAGAATTGTTGTTAAAGAAGATG AATTTCGAGCAACGGATGGGCATAGATGATACCCTATCCATCTATAGGGCAAAGATAGTGGATGTTTTGGCTCTTCTTTCATGCCGTCTTGGTCTTGACC AGGATACTCTACACGCAGCATTTTCATACTACGATAGATACAACTCTTTGAATCCTGTTGTTGATACAGATAAATTGGAGTTAATTGGTGTTTCCTCACT ATACATTGCCGGAAAATACGAAGAAAGGGTTGGGATGAAACAATCTTTTTATTTTGTGCAATTTATGGATTCTCCGATTGCAGACGGACAGATGTTTCGG AGAGCTTCTATTTTAGCTGCCTTGGAGTTTTGCTTCTGCCCTTTTGATGCCACTTTCTTGCTGCTGGTCTAG
AA sequence Show only first row Show all	>Potri.008G008551.1 pacid=42808802 polypeptide=Potri.008G008551.1.p locus=Potri.008G008551 ID=Potri.008G008551.1.v4.1 annot-version=v4.1 MLILMFLFAPCRSSQSLLSCVLVGFAGSSSVSIVCCELLRLRRNMDEQESSKKREPLSTMEEERPSKVQKNEDLTAPEEIDNRVIEYLYGMEEELLLKKM NFEQRMGIDDTLSIYRAKIVDVLALLSCRLGLDQDTLHAAFSYYDRYNSLNPVVDTDKLELIGVSSLYIAGKYEERVGMKQSFYFVQFMDSPIADGQMFR RASILAALEFCFCPFDATFLLLV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G47230		CYCA3;4	CYCLIN A3;4 (.1.2)		Potri.008G008551 [exp]	0	1
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145766 [exp]	1.73	0.9059
					Potri.003G223700 [exp]	2.00	0.8997
AT5G50110			S-adenosyl-L-methionine-depend...		Potri.015G071001 [exp]	2.23	0.8816
AT1G67670			unknown protein		Potri.010G054700 [exp]	2.82	0.8933
					Potri.015G072732 [exp]	4.24	0.8997
AT3G26020			Protein phosphatase 2A regulat...		Potri.004G177900 [exp]	6.70	0.8547
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G031000 [exp]	6.78	0.8050
AT3G27120			P-loop containing nucleoside t...		Potri.001G331300 [exp]	7.74	0.8618
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.005G122550 [exp]	8.00	0.8572
					Potri.001G357150 [exp]	8.60	0.7501

Compare expression of checked genes

Potri.008G008551 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.