Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49830 1070 / 0 EXO84B exocyst complex component 84B (.1.2.3) AT1G10385 801 / 0 Vps51/Vps67 family (components of vesicular transport) protein (.1) AT1G10180 367 / 9e-116 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249900 [exp] 1352 / 0 AT5G49830 1072 / 0.0 exocyst complex component 84B (.1.2.3) Potri.016G063700 [exp] 841 / 0 AT1G10385 899 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Potri.012G120000 [exp] 364 / 2e-114 AT1G10180 809 / 0.0 unknown protein Potri.015G118500 [exp] 348 / 3e-108 AT1G10180 788 / 0.0 unknown protein Potri.015G119300 [exp] 297 / 7e-91 AT1G10180 628 / 0.0 unknown protein Potri.014G195400 [exp] 254 / 2e-72 AT1G10180 215 / 8e-59 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034843 [exp] 1185 / 0 AT5G49830 1062 / 0.0 exocyst complex component 84B (.1.2.3) Lus10035756 [exp] 1158 / 0 AT5G49830 1049 / 0.0 exocyst complex component 84B (.1.2.3) Lus10037332 [exp] 1145 / 0 AT5G49830 1052 / 0.0 exocyst complex component 84B (.1.2.3) Lus10017692 [exp] 756 / 0 AT1G10385 905 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033648 [exp] 735 / 0 AT1G10385 891 / 0.0 Vps51/Vps67 family (components of vesicular transport) protein (.1) Lus10033387 [exp] 714 / 0 AT5G49830 588 / 0.0 exocyst complex component 84B (.1.2.3) Lus10040609 [exp] 338 / 1e-104 AT1G10180 854 / 0.0 unknown protein Lus10018297 [exp] 338 / 2e-104 AT1G10180 858 / 0.0 unknown protein Lus10022896 [exp] 256 / 3e-73 AT1G10180 225 / 2e-62 unknown protein Lus10024929 [exp] 199 / 3e-54 AT1G10385 170 / 2e-44 Vps51/Vps67 family (components of vesicular transport) protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [poplar] [flax] Vps51 PF08700 [poplar] [flax] Vps51 Vps51/Vps67 CL0295 [poplar] [flax] Vps51 PF16528 [poplar] [flax] Exo84_C Exocyst component 84 C-terminal
Representative CDS sequence Show only first row Show all	>Potri.008G009100.1 pacid=42806115 polypeptide=Potri.008G009100.1.p locus=Potri.008G009100 ID=Potri.008G009100.1.v4.1 annot-version=v4.1 ATGGCTTCAGCGAAGACGAGTAGTCGTTCGCGAGGGACGCCGGTGAAGGAGAACGGCACGAAGCTCGAGGAAGGACTCAACGTCTTCAAGTCTGATAGAT TCAACGCCGATTCTTACGTTCAGTCCAAATGCTCTCTAAACGAGAAGGAAATAAAGCAGTTATGCTCGTATCTTTTGGATTTAAAGAGGGCTTCAGCTGA CGAAATGCGGAAAAGTGTTTACGCTAATTATGCTGCGTTTATAAGGACGTCGAAGGAGATATCAGATTTGGAAGGGGAGTTGTTGTCTATAAGAAATTTG TTATCTACTCAAGCAACTTTGATTCATGGTTTAGTAGAGGGAGTTAACATTGATTCTTTATCTTTGAAAGCATCTGAAGGGTCTTTGGTAAATGGGTTAG AGAATGTTGAAGATAGAGAGCCGACTGATTTGGAGAGATGGTTGGCTGAGTTCCCTGATATGCTTGATGTTTTGTTAGCTGAGAGGAGAGTGGATGAAGC TCTGGCGGTGATTGACGAGGGAGAACGTATAGCTGCTGAAATGAAAAAAACAGAATTGTCAAGTCCTGGTATACTTAGGTCTTTAGAGATAGCGATTACA GAGCGCGGGCAAAAGTTGGCTGATCAGCTTGCTGAAGCTGCTTGCCAACCTTCTACTCGCAGTAGTGAACTTCGTGCAGCCATATCAGCTCTTAAAAAGC TCGGGGATGGCCCTCGAGCTCATAGCTTGCTCCTCAATGCACACCTCCAAAGATATCAGTATAATATGCAAAGCCTCTGCCCGTCTAGCACATCATATGG AGGAGCTTATACGGCTGCACTGTCACAGATAGTGTTTTCTGCAATCGTTCAAGCTTCTAGTGATTCTTTGGCTATTTTCGGTAAGGAACGGGAGTATAGG TCTGAGCTTGTGATGTGGGCCACCAAGCAAACAGAGGCCTTTGCGGGTCTTGTTAAAAGACATGCAATAGCGTCATCAGCAGCTGCTGGAGGTTTAAGAG CCGCTGCAGAGTGTGTTCAAATAGCTTTAGGTCATTGCTCTTTGTTGGAAGCTCGTGGTTTGGCACTCTGTCCTGTGCTATTAAAACTCTTTAGGCCTAG TGTTGAACAAGCCTTAAATGCCAATCTAAAACGAATTGAAGAGAGCACTGCTGCTTTGGCTGCTGCTGATGATTGGGTACTTACTTATCCTCCAACCAGT ACTCGGCAGTCTGGCAGGTCTTCTGTTACATCTCTTGGTAATGCAGCAGCATTTCAACATAAACTTACAAGTAGTGCCCATCGCTTCAATTTAATGGTCC AGGACTTCTTTGAGGATGTAGGACCACTCTTAAGCATGCAAATGGGAGGCCAAACACTGGAAGGTTTGTTCCAAGTATTTAACTCGTACGTGAACATGCT CATAAAAGCTTTACCAGGTTCGATGGAAGAAGAGGCAAACTTTGAAGGTTGTGGAAATAAAATTGTGCAAATGGCTGAGACTGAAGCTCAACAAATTGCA TTACTGGCTAATGCTTCATTATTAGCAGATGAACTACTCCCACGTGCAGCCATGAAACTTGCACCTCCGAATCAGGCTAATTACAAGGATGATTCCCGTA GAAGACCTTTAGATAGGCAGAACCGTCATCCTGAGCAACGAGAATGGAGGAAGCGGCTTGCAGGTTCGGTTGATAGATTAAAAGATGCTTTCTGTCGACA ACATGCACTGGATCTCATTTTTACAGAAGATGGTGATAGCTATCTTACTGCAGAAATGTATACAAACATGGTTGGAAGTGCAGATGAGGTAGATCGGTTT CCATCCCCAATATTCCAGGAACTTTTTGTAAAACTGAACCGTATGGCTAGTATAGCAGCAGAGATGTTTGTAGGAAGGGAAAGATTTGCAACATTACTAT TGATGAGACTTACAGAAACAGTCATTTTATGGCTTTCAGAAGATCAAAATTTTTGGGATGATATCGAGGAAGGTCCAAGGCCTTTAGGTCCTCTTGGTAT ACAACAGTTCTATTTGGACATGAAGTTTGTCATGTGCTTTGCTTCCCAAGGACGCTACTTATCACGAAATTTGCATCGCGTTGTCAATGAAATAATTGCA AAAGCTTTGGCAGTATTCTCTGCAACAGGGATGGATCCAGACAGGGAGCTGCCAGAAGATGATTGGTTTAATGACATTTGCCAAGAAGCAATGGAAAGAT TAAGCGGAAAACCCAAAGCCATCGATGGGGATAATGAACTTGGTAGCCCAACAGCCTCTGTCTCAGCACAATCAATTTCATCAGTCAGATCTCATGGAAG TTCATAA
AA sequence Show only first row Show all	>Potri.008G009100.1 pacid=42806115 polypeptide=Potri.008G009100.1.p locus=Potri.008G009100 ID=Potri.008G009100.1.v4.1 annot-version=v4.1 MASAKTSSRSRGTPVKENGTKLEEGLNVFKSDRFNADSYVQSKCSLNEKEIKQLCSYLLDLKRASADEMRKSVYANYAAFIRTSKEISDLEGELLSIRNL LSTQATLIHGLVEGVNIDSLSLKASEGSLVNGLENVEDREPTDLERWLAEFPDMLDVLLAERRVDEALAVIDEGERIAAEMKKTELSSPGILRSLEIAIT ERGQKLADQLAEAACQPSTRSSELRAAISALKKLGDGPRAHSLLLNAHLQRYQYNMQSLCPSSTSYGGAYTAALSQIVFSAIVQASSDSLAIFGKEREYR SELVMWATKQTEAFAGLVKRHAIASSAAAGGLRAAAECVQIALGHCSLLEARGLALCPVLLKLFRPSVEQALNANLKRIEESTAALAAADDWVLTYPPTS TRQSGRSSVTSLGNAAAFQHKLTSSAHRFNLMVQDFFEDVGPLLSMQMGGQTLEGLFQVFNSYVNMLIKALPGSMEEEANFEGCGNKIVQMAETEAQQIA LLANASLLADELLPRAAMKLAPPNQANYKDDSRRRPLDRQNRHPEQREWRKRLAGSVDRLKDAFCRQHALDLIFTEDGDSYLTAEMYTNMVGSADEVDRF PSPIFQELFVKLNRMASIAAEMFVGRERFATLLLMRLTETVILWLSEDQNFWDDIEEGPRPLGPLGIQQFYLDMKFVMCFASQGRYLSRNLHRVVNEIIA KALAVFSATGMDPDRELPEDDWFNDICQEAMERLSGKPKAIDGDNELGSPTASVSAQSISSVRSHGSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49830		EXO84B	exocyst complex component 84B ...		Potri.008G009100 [exp]	0	1
AT2G25170		CKH2, SSL2, GYM...	SUPPRESSOR OF SLR 2, GYMNOS, C...		Potri.018G021100 [exp]	5.74	0.7448	PKL.1
AT4G02390		ATPARP1, APP	POLY\(ADP-RIBOSE\) POLYMERASE ...		Potri.014G128200 [exp]	10.67	0.6802	Pt-APP.2
AT2G29040			Exostosin family protein (.1)		Potri.009G032500 [exp]	15.36	0.7305
AT2G16950		ATTRN1	transportin 1 (.1.2)		Potri.004G177700 [exp]	19.18	0.6752
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.001G472900 [exp]	24.85	0.6930
AT5G23910			ATP binding microtubule motor ...		Potri.015G146000 [exp]	38.15	0.6239
AT4G03080		BSL1	BRI1 suppressor 1 (BSU1)-like ...		Potri.014G135800 [exp]	39.79	0.6523	PP1.6
AT5G53150			DNAJ heat shock N-terminal dom...		Potri.015G020200 [exp]	42.63	0.6669
AT5G51050		APC2	ATP/phosphate carrier 2, Mitoc...		Potri.012G110700 [exp]	49.83	0.5788
AT2G27210		BSL3	BRI1 suppressor 1 (BSU1)-like ...		Potri.009G016900 [exp]	50.99	0.6607

Compare expression of checked genes

Potri.008G009100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.