Plant FIBer expression Database

Potri.008G009201 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G249800
[exp]
68 / 2e-14 AT5G12100 774 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.008G009201.1 pacid=42808409 polypeptide=Potri.008G009201.1.p locus=Potri.008G009201 ID=Potri.008G009201.1.v4.1 annot-version=v4.1
ATGCTTGAGAACGGTTTCCGTCCTATTGTCTGCATCTGCTTAGAAAGGGAGGGGGGGTTGCAAGAGGCCCGGATTATCAGCTCTGAAATGATTGTGAATG
GAATGGATGATTTGAACAGTAATGAGGAGCTGTCTGCTGTTGCCAAGATACAAGAGGTGTTCTTGGTACCATTAGCTATCTGCAGAGACTATACATTCTC
GCATGTCTTTTCTTCACACGATCTCATTTACTATATGATGCCAGCATTTGAAATGTGTGGGCGGGCAGTGTTTCCTTGTACTTGCATTCTCCGGTTCCTA
TTTATCTCGAGTTTGCTTCGATGA
AA sequence
>Potri.008G009201.1 pacid=42808409 polypeptide=Potri.008G009201.1.p locus=Potri.008G009201 ID=Potri.008G009201.1.v4.1 annot-version=v4.1
MLENGFRPIVCICLEREGGLQEARIISSEMIVNGMDDLNSNEELSAVAKIQEVFLVPLAICRDYTFSHVFSSHDLIYYMMPAFEMCGRAVFPCTCILRFL
FISSLLR

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.008G009201
[exp]
0 1
AT5G59900 Pentatricopeptide repeat (PPR)... Potri.001G236800
[exp]
4.47 0.6950
AT5G64420 DNA polymerase V family (.1) Potri.009G079900
[exp]
11.78 0.6981
AT1G27090 glycine-rich protein (.1) Potri.008G194200
[exp]
12.00 0.6759
AT1G65660 SMP1 SWELLMAP 1, Pre-mRNA splicing ... Potri.015G048200
[exp]
27.27 0.6678
AT5G04240 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger... Potri.008G037800
[exp]
28.77 0.6377
AT1G72440 SWA2, EDA25 SLOW WALKER2, embryo sac devel... Potri.001G164100
[exp]
31.30 0.6713
AT4G20020 unknown protein Potri.004G218650
[exp]
35.28 0.6822
AT3G47850 unknown protein Potri.012G072600
[exp]
37.70 0.6455
AT5G17580 Phototropic-responsive NPH3 fa... Potri.013G073700
[exp]
42.63 0.5495
AT5G08780 winged-helix DNA-binding trans... Potri.005G069700
[exp]
64.03 0.6109

Potri.008G009201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.