Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73080 1064 / 0 ATPEPR1, PEPR1 PEP1 receptor 1 (.1) AT1G17750 1015 / 0 AtPEPR2 PEP1 receptor 2 (.1) AT5G63930 605 / 0 Leucine-rich repeat protein kinase family protein (.1) AT2G33170 600 / 0 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT4G20140 567 / 0 GSO1 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) AT5G44700 565 / 0 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT1G73066 543 / 0 Leucine-rich repeat family protein (.1) AT3G24240 556 / 2e-179 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT1G17230 540 / 1e-173 Leucine-rich receptor-like protein kinase family protein (.1) AT5G56040 529 / 7e-170 Leucine-rich receptor-like protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G007600 [exp] 1260 / 0 AT1G73080 981 / 0.0 PEP1 receptor 1 (.1) Potri.012G022800 [exp] 596 / 0 AT1G73080 582 / 0.0 PEP1 receptor 1 (.1) Potri.003G174900 [exp] 587 / 0 AT2G33170 1348 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.001G053400 [exp] 587 / 0 AT2G33170 1311 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.013G051300 [exp] 573 / 0 AT5G63930 1281 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G139700 [exp] 569 / 0 AT1G17230 1363 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.019G025500 [exp] 555 / 2e-179 AT5G63930 1320 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.003G175700 [exp] 538 / 3e-172 AT3G24240 1374 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Potri.003G156200 [exp] 531 / 1e-168 AT4G20140 1394 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039030 [exp] 1196 / 0 AT1G73080 1095 / 0.0 PEP1 receptor 1 (.1) Lus10008849 [exp] 581 / 0 AT1G73080 648 / 0.0 PEP1 receptor 1 (.1) Lus10036251 [exp] 536 / 2e-170 AT4G20140 1495 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10017782 [exp] 524 / 6e-168 AT1G34110 1467 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10000509 [exp] 518 / 9e-166 AT1G34110 1464 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10011756 [exp] 518 / 8e-165 AT3G24240 1455 / 0.0 Leucine-rich repeat receptor-like protein kinase family protein (.1) Lus10038392 [exp] 518 / 3e-164 AT4G20140 1376 / 0.0 GASSHO1, Leucine-rich repeat transmembrane protein kinase (.1) Lus10023677 [exp] 503 / 7e-160 AT5G48940 1361 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10003612 [exp] 498 / 4e-157 AT1G35710 751 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Lus10028612 [exp] 494 / 2e-156 AT5G48940 1051 / 0.0 Leucine-rich repeat transmembrane protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0022 [poplar] [flax] LRR PF00560 [poplar] [flax] LRR_1 Leucine Rich Repeat CL0022 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.008G009300.1 pacid=42805745 polypeptide=Potri.008G009300.1.p locus=Potri.008G009300 ID=Potri.008G009300.1.v4.1 annot-version=v4.1 ATGAATCTTTTTTTGCGTCATTTCTTCTTGCTGTTGTGGTGTTGCTTTGTGTCTGTATGTACTAATAGTGTCTCCGGTTTGAACTATGATGGCTTGGCTC TGATGTCACTCTTGAGGAAATGGGATTCTGTGCCTACTTCCATTACTTCAAGTTGGAATTCTTCAGACTCGACTCCTTGTTCTTGGCTAGGTATAGGATG TGATCATAGAAGTCATTGTGTGGTTTCTTTGAACCTTTCTGGCTTAGGAATTTCTGGTCCTTTGGGACCTGAAACTGGGCAGTTAAAGCAGTTAAAGACT GTTGATTTGAACACCAATTATTTCTCTGGTGATATACCCTCACAGTTGGGAAATTGTAGTCTCCTTGAGTACTTGGATTTGTCTGCAAATAGCTTTACTG GTGGAATACCTGATAGCTTTAAGTACTTGCAAAATTTACAAACATTGATTATTTTCTCGAATTCACTGTCTGGTGAAATACCTGAATCATTGTTCCAAGA TTTGGCTTTACAAGTTTTGTATTTGGACACCAATAAATTCAATGGTTCCATTCCTAGGAGTGTTGGTAACTTGACTGAGCTTTTAGAACTGTCCTTATTT GGAAATCAATTATCTGGGACAATCCCTGAGTCTATTGGAAATTGTAGAAAATTGCAATCTCTCCCTCTGAGTTATAACAAGTTAAGTGGTTCTTTGCCTG AGATTCTAACCAATCTTGAAAGCCTTGTTGAATTATTTGTTAGTCATAATAGTCTTGAGGGTAGAATTCCTTTAGGTTTCGGCAAATGCAAGAATTTGGA AACCTTAGATTTGTCATTCAATAGCTATAGTGGGGGTCTTCCACCAGATTTAGGCAATTGTAGTAGCTTAGCAACCTTGGCCATTATCCATAGCAACTTA AGAGGCGCTATCCCATCTTCCTTTGGCCAACTGAAAAAGCTTTCTGTGCTCGACCTTTCTGAGAATCGACTGTCTGGGACGATTCCTCCTGAACTTAGTA ATTGCAAGTCCTTGATGACCTTAAATTTATACACAAATGAGCTTGAGGGAAAGATTCCGAGTGAGTTGGGGAGGCTAAACAAATTGGAGGACCTCGAATT GTTCAACAATCATTTGAGTGGTGCAATTCCTATTAGCATCTGGAAGATTGCGAGCCTTAAGTACCTCCTTGTGTATAACAACAGTCTTTCTGGTGAATTG CCTCTTGAGATCACTCATCTCAAGAACCTAAAGAACTTGTCACTATACAACAACCAGTTCTTTGGTGTCATACCCCAAAGTTTGGGAATCAACAGCAGTT TGTTGCAGCTGGACTTCACAGATAATAAGTTCACAGGTGAAATTCCCCCAAACCTTTGCCATGGAAAGCAGTTGAGAGTTCTTAATATGGGCCGGAACCA ACTTCAAGGCAGCATTCCTTCTGATGTGGGAGGCTGCTTAACGCTCTGGAGATTGATCCTCAAGGAGAACAACCTCTCAGGTGCCCTTCCAGAATTTTCA GAAAATCCAATCCTCTATCACATGGACGTCAGCAAAAATAATATTACAGGTCCAATTCCACCCAGCATTGGGAACTGTTCTGGTCTCACTTCCATTCATC TTTCCATGAACAAGCTTACAGGGTTTATACCCTCAGAGCTAGGAAATCTTGTAAACCTTCTGGTAGTGGATCTTTCATCCAACCAACTGGAAGGTTCTTT GCCATCGCAGCTGTCAAAGTGTCACAACTTAGGCAAGTTTGATGTAGGGTTCAATTCACTGAACGGCTCAGTTCCATCGAGTTTAAGGAACTGGACCAGC TTGTCCACTTTGATTTTAAAAGAGAATCATTTTATTGGGGGAATTCCACCTTTCCTCTCAGAACTTGAAAAGCTTACAGAGATACAACTTGGTGGAAATT TTCTGGGAGGTGAGATTCCTTCATGGATTGGGTCTTTACAGAGTCTGCAATATGCATTGAATCTCAGCAGTAATGGATTGTTTGGAGAGCTTCCTTCAGA GCTGGGGAACTTGATCAAGCTTGAACAGCTTCAGTTATCAAACAATAATCTGACAGGAACTCTAGCACCTCTTGATAAAATCCATTCGTTGGTCCAGGTC GATATTTCATACAATCACTTCAGTGGTCCAATACCAGAAACACTAATGAACTTGCTTAACTCATCGCCGTCATCATTCTGGGGCAATCCCGATCTATGTG TCAGTTGTCTTCCATCAGGTGGCTTAACATGCACCAAAAACAGAAGTATCAAGTCATGTGACTCTCAGTCAAGCAAGCGAGACAGCTTTTCTAGAGTGGC TGTCGCGCTGATAGCTATTGCTTCTGTGGTTGCTGTTTTCATGCTTGTTGGACTGGTTTGCATGTTTATCTTGTGCAGAAGATGTAAGCAGGATCTTGGG ATCGACCATGATGTTGAAATTGCTGCTCAAGAGGGCCCTTCTTCCCTACTCAACAAAGTGATGCAAGCTACTGAGAATCTAAATGACAGACATATAGTTG GGAGGGGAACCCATGGAACCGTTTATAAGGCTTCATTGGGTGGAGACAAAATATTTGCAGTTAAGAAGATAGTATTTACAGGCCACAAAGGAGGAAACAA AAGTATGGTTACAGAAATTCAAACCATTGGGAAAATCAGGCACCGGAATCTGCTCAAATTGGAAAACTTTTGGTTACGGAAGGATTATGGTCTGATCCTG TATGCCTACATGCAAAATGGGAGCGTTCATGATGTCTTACATGGGAGCACACCACCGCAAACCCTGGAGTGGAGCATACGCCATAAAATAGCTTTAGGAA CTGCCCATGGTTTGGAATATCTCCACTATGATTGCAATCCTCCTATTGTGCATCGAGACATCAAACCAGAAAACATTCTCTTAGACTCTGATATGGAGCC TCATATCTCTGATTTCGGTATAGCTAAGCTACTTGATCAGTCTTCTGCTTCAGCACAGTCTTTCCTGGTTGCAGGCACAATTGGATATATAGCACCAGAA AACGCCTTGTCGACAATAAAGAGCAAGGAATCGGATGTTTATAGCTACGGGGTTGTTTTGCTTGAGCTGATAACTAGAAAGAAGGCATTGGATCCATTAT TTGTGGGGGAAACAGATATTGTAGAGTGGGTCAGATCTGTTTGGAGCAGCACAGAAGACATCAACAAGATTGCTGATTCAAGCCTAAGGGAGGAGTTTTT GGATTCAAATATCATGAATCAAGCCATTGATGTGCTTTTGGTGGCTTTGAGATGCACTGAAAAGGCGCCTAGGAGAAGACCCACAATGAGAGATGTTGTC AAGCGATTAGTAAAAAGAGATGCCAGCATTAGAGGCAAACGCAGCTGA
AA sequence Show only first row Show all	>Potri.008G009300.1 pacid=42805745 polypeptide=Potri.008G009300.1.p locus=Potri.008G009300 ID=Potri.008G009300.1.v4.1 annot-version=v4.1 MNLFLRHFFLLLWCCFVSVCTNSVSGLNYDGLALMSLLRKWDSVPTSITSSWNSSDSTPCSWLGIGCDHRSHCVVSLNLSGLGISGPLGPETGQLKQLKT VDLNTNYFSGDIPSQLGNCSLLEYLDLSANSFTGGIPDSFKYLQNLQTLIIFSNSLSGEIPESLFQDLALQVLYLDTNKFNGSIPRSVGNLTELLELSLF GNQLSGTIPESIGNCRKLQSLPLSYNKLSGSLPEILTNLESLVELFVSHNSLEGRIPLGFGKCKNLETLDLSFNSYSGGLPPDLGNCSSLATLAIIHSNL RGAIPSSFGQLKKLSVLDLSENRLSGTIPPELSNCKSLMTLNLYTNELEGKIPSELGRLNKLEDLELFNNHLSGAIPISIWKIASLKYLLVYNNSLSGEL PLEITHLKNLKNLSLYNNQFFGVIPQSLGINSSLLQLDFTDNKFTGEIPPNLCHGKQLRVLNMGRNQLQGSIPSDVGGCLTLWRLILKENNLSGALPEFS ENPILYHMDVSKNNITGPIPPSIGNCSGLTSIHLSMNKLTGFIPSELGNLVNLLVVDLSSNQLEGSLPSQLSKCHNLGKFDVGFNSLNGSVPSSLRNWTS LSTLILKENHFIGGIPPFLSELEKLTEIQLGGNFLGGEIPSWIGSLQSLQYALNLSSNGLFGELPSELGNLIKLEQLQLSNNNLTGTLAPLDKIHSLVQV DISYNHFSGPIPETLMNLLNSSPSSFWGNPDLCVSCLPSGGLTCTKNRSIKSCDSQSSKRDSFSRVAVALIAIASVVAVFMLVGLVCMFILCRRCKQDLG IDHDVEIAAQEGPSSLLNKVMQATENLNDRHIVGRGTHGTVYKASLGGDKIFAVKKIVFTGHKGGNKSMVTEIQTIGKIRHRNLLKLENFWLRKDYGLIL YAYMQNGSVHDVLHGSTPPQTLEWSIRHKIALGTAHGLEYLHYDCNPPIVHRDIKPENILLDSDMEPHISDFGIAKLLDQSSASAQSFLVAGTIGYIAPE NALSTIKSKESDVYSYGVVLLELITRKKALDPLFVGETDIVEWVRSVWSSTEDINKIADSSLREEFLDSNIMNQAIDVLLVALRCTEKAPRRRPTMRDVV KRLVKRDASIRGKRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73080		ATPEPR1, PEPR1	PEP1 receptor 1 (.1)		Potri.008G009300 [exp]	0	1
AT1G63830			PLAC8 family protein (.1.2.3)		Potri.001G101100 [exp]	16.58	0.7472
					Potri.003G152800 [exp]	23.97	0.7354
AT5G63970			Copine (Calcium-dependent phos...		Potri.005G065700 [exp]	36.12	0.7728
AT5G53900			Serine/threonine-protein kinas...		Potri.001G397800 [exp]	39.98	0.7448
AT2G23690			unknown protein		Potri.009G110600 [exp]	56.49	0.6965
AT4G12731			unknown protein		Potri.001G226500 [exp]	81.48	0.7040
AT4G40020			Myosin heavy chain-related pro...		Potri.005G072400 [exp]	85.35	0.7171
AT4G32300		SD2-5	S-domain-2 5 (.1)		Potri.018G027300 [exp]	110.02	0.7175
AT4G12040		AtSAP7	stress-associated protein 7, A...		Potri.001G115000 [exp]	147.58	0.6704
					Potri.008G204750 [exp]	165.02	0.7021

Compare expression of checked genes

Potri.008G009300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.