Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21215 219 / 4e-69 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G42240 129 / 4e-35 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT3G13700 76 / 2e-15 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT1G06960 46 / 8e-06 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT5G19350 46 / 3e-05 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G30260 44 / 8e-05 U2B'' U2 small nuclear ribonucleoprotein B (.1) AT1G03457 42 / 0.0006 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT2G47580 40 / 0.0009 U1A spliceosomal protein U1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249700 [exp] 468 / 7e-167 AT3G21215 376 / 9e-131 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.007G046600 [exp] 86 / 5e-19 AT2G42240 334 / 4e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.003G035000 [exp] 79 / 2e-16 AT3G13700 348 / 3e-121 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G127800 [exp] 48 / 2e-06 AT2G47580 347 / 6e-122 spliceosomal protein U1A (.1) Potri.006G224900 [exp] 47 / 8e-06 AT1G21320 122 / 2e-33 nucleotide binding;nucleic acid binding (.1.2) Potri.019G121400 [exp] 46 / 1e-05 AT2G30260 305 / 7e-106 U2 small nuclear ribonucleoprotein B (.1) Potri.013G153700 [exp] 45 / 2e-05 AT2G30260 297 / 8e-103 U2 small nuclear ribonucleoprotein B (.1) Potri.002G203600 [exp] 43 / 0.0001 AT2G47580 349 / 1e-122 spliceosomal protein U1A (.1) Potri.012G019300 [exp] 42 / 0.0003 AT1G76940 167 / 2e-51 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10034844 [exp] 329 / 2e-112 AT3G21215 370 / 1e-128 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10033388 [exp] 303 / 4e-102 AT3G21215 337 / 2e-115 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026413 [exp] 44 / 6e-05 AT2G30260 350 / 1e-123 U2 small nuclear ribonucleoprotein B (.1) Lus10042240 [exp] 44 / 6e-05 AT2G30260 352 / 2e-124 U2 small nuclear ribonucleoprotein B (.1) Lus10007419 [exp] 42 / 0.0005 AT2G43410 627 / 0.0 RNA binding (.1.2.3.4) Lus10003358 [exp] 41 / 0.0007 AT2G47580 367 / 7e-130 spliceosomal protein U1A (.1) Lus10008424 [exp] 41 / 0.0009 AT2G47580 365 / 4e-129 spliceosomal protein U1A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.008G009400.1 pacid=42806953 polypeptide=Potri.008G009400.1.p locus=Potri.008G009400 ID=Potri.008G009400.1.v4.1 annot-version=v4.1 ATGGCGGGAACAGGTATCCACCCATACCATCAGCAATGGCCGCCAGCACAAGCTCCACCACCCCCCACCGCCCCAGGCGCTCCTCCTCCTTCCATCCACC ACGCTCCACCTCACGTCCTCTTCGACAACTCCAATCGCGGCCCTCCCACTCACGAAGAGGTTCGAACAATATTCATCACCGGATTCCCTGACGATGTGAA GGAGAGAGAATTGCAGAATTTGTTAAGATGGTTACCTGGTTATGAGGCTTCGCAAGTTAATTATAAAGGAGATAAAGCTATGGGTTTCGCTCTCTTTTCT TCTTCCCAGCACGCCATTGCTGCTAAAGATTCTCTCCAGGATATGGTTTTTGATGTGGAGACGAAGTCAGTGTTGCATACTGAGATGGCTAAGAAGAATC TCTTTGTTAAAAGAGGAATAGTTGCAGATTCTAATGCTTATGATCAAAGCAAACGTTTGCGAACTGGTGGTGATTATTCTCACGCTGCTTATACCACTCC ATCTCCATTTCACCCTCCTCCTCCTGTTTGGGGACCACATGGGTACATGGCTCCAGTTCCGCCTCCATATGATCCGTATGGAGGTTACCCTGCTCCTCAA GTACCAATGCCTCCTGCTCCTATCCCAGCTCCTAGCAGCTATGTGCCAATACAGAATACAAAAGATAACCCTCCTTGCAATACCCTATTTATTGGCAATC TTGGTCAGAACATTAATGAGGATGAACTGAGGGGTCTATTCAGCGTGCAACCTGGTTTTAAGCAAATGAAGATTTTGAGACAAGAAAGGCATACTGTTTG TTTTATTGAGTTTGAAGATTTGAACAGTGCAACCAATGTGCACCATAGTTTACAGGGTGCTGTTATTCCAAGTTCTGGATCTATTGGCATGCGAATACAA TATTCAAAGAATCCGTTTGGGAGAAGGAAGGATGGGATCCACCATGTTGCTTCTCATAGTGCCAATGGAGCTTCACCACCAATTACCTATCAGTAG
AA sequence Show only first row Show all	>Potri.008G009400.1 pacid=42806953 polypeptide=Potri.008G009400.1.p locus=Potri.008G009400 ID=Potri.008G009400.1.v4.1 annot-version=v4.1 MAGTGIHPYHQQWPPAQAPPPPTAPGAPPPSIHHAPPHVLFDNSNRGPPTHEEVRTIFITGFPDDVKERELQNLLRWLPGYEASQVNYKGDKAMGFALFS SSQHAIAAKDSLQDMVFDVETKSVLHTEMAKKNLFVKRGIVADSNAYDQSKRLRTGGDYSHAAYTTPSPFHPPPPVWGPHGYMAPVPPPYDPYGGYPAPQ VPMPPAPIPAPSSYVPIQNTKDNPPCNTLFIGNLGQNINEDELRGLFSVQPGFKQMKILRQERHTVCFIEFEDLNSATNVHHSLQGAVIPSSGSIGMRIQ YSKNPFGRRKDGIHHVASHSANGASPPITYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21215			RNA-binding (RRM/RBD/RNP motif...		Potri.008G009400 [exp]	0	1
AT1G70620			cyclin-related (.1.2.3)		Potri.010G046000 [exp]	11.22	0.7960
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	11.53	0.7966
AT1G19485			Transducin/WD40 repeat-like su...		Potri.008G200900 [exp]	13.96	0.7614
AT1G10390			Nucleoporin autopeptidase (.1....		Potri.011G148800 [exp]	14.49	0.7555
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	16.97	0.7756
AT2G36810			ARM repeat superfamily protein...		Potri.006G120800 [exp]	21.90	0.7303
AT4G37270		ATHMA1, HMA1	ARABIDOPSIS THALIANA HEAVY MET...		Potri.005G142732 [exp]	26.07	0.7192
AT5G16630		ATRAD4	DNA repair protein Rad4 family...		Potri.004G087400 [exp]	27.20	0.7493
AT2G43370			RNA-binding (RRM/RBD/RNP motif...		Potri.017G033400 [exp]	29.49	0.6290
AT2G40650			PRP38 family protein (.1)		Potri.005G021600 [exp]	34.81	0.7445

Compare expression of checked genes

Potri.008G009400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.