Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G17745 826 / 0 PGDH D-3-phosphoglycerate dehydrogenase (.1.2) AT4G34200 789 / 0 EDA9 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) AT3G19480 751 / 0 D-3-phosphoglycerate dehydrogenase (.1) AT1G17744 172 / 7e-51 unknown protein AT1G68010 100 / 1e-22 ATHPR1, HPR hydroxypyruvate reductase (.1.2) AT5G14780 97 / 2e-21 FDH formate dehydrogenase (.1) AT1G79870 88 / 9e-19 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) AT1G72190 86 / 1e-17 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT1G12550 78 / 2e-15 HPR3 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1) AT2G45630 74 / 4e-14 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249600 [exp] 969 / 0 AT1G17745 846 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Potri.001G300900 [exp] 803 / 0 AT4G34200 885 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.009G096600 [exp] 799 / 0 AT4G34200 888 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.002G122700 [exp] 783 / 0 AT4G34200 879 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Potri.014G022800 [exp] 783 / 0 AT3G19480 860 / 0.0 D-3-phosphoglycerate dehydrogenase (.1) Potri.004G175800 [exp] 100 / 3e-22 AT1G68010 660 / 0.0 hydroxypyruvate reductase (.1.2) Potri.014G161300 [exp] 91 / 2e-19 AT5G14780 581 / 0.0 formate dehydrogenase (.1) Potri.003G052700 [exp] 85 / 7e-18 AT1G79870 443 / 7e-158 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Potri.001G113250 [exp] 82 / 1e-16 AT1G12550 340 / 9e-117 hydroxypyruvate reductase 3, D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027868 [exp] 788 / 0 AT4G34200 971 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10014096 [exp] 782 / 0 AT4G34200 967 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10019818 [exp] 781 / 0 AT4G34200 966 / 0.0 embryo sac development arrest 9, D-3-phosphoglycerate dehydrogenase (.1) Lus10035758 [exp] 430 / 2e-143 AT1G17745 727 / 0.0 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10037333 [exp] 275 / 3e-89 AT1G17745 265 / 2e-86 D-3-phosphoglycerate dehydrogenase (.1.2) Lus10019793 [exp] 102 / 3e-23 AT1G68010 709 / 0.0 hydroxypyruvate reductase (.1.2) Lus10014115 [exp] 102 / 2e-22 AT1G68010 700 / 0.0 hydroxypyruvate reductase (.1.2) Lus10037552 [exp] 97 / 6e-22 AT1G79870 410 / 6e-145 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10025796 [exp] 92 / 6e-20 AT1G79870 466 / 1e-166 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2) Lus10035866 [exp] 91 / 8e-20 AT1G79870 466 / 6e-167 D-isomer specific 2-hydroxyacid dehydrogenase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0325 [poplar] [flax] Form_Glyc_dh PF00389 [poplar] [flax] 2-Hacid_dh D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CL0070 [poplar] [flax] ACT PF01842 [poplar] [flax] ACT ACT domain CL0063 [poplar] [flax] NADP_Rossmann PF07991 [poplar] [flax] IlvN Acetohydroxy acid isomeroreductase, NADPH-binding domain
Representative CDS sequence Show only first row Show all	>Potri.008G009500.1 pacid=42806653 polypeptide=Potri.008G009500.1.p locus=Potri.008G009500 ID=Potri.008G009500.1.v4.1 annot-version=v4.1 ATGGCTTCTTCCTCTACCAAACCAATCTCCACTCCTCCATTCACCACCACCATCTCCTCCTCTTCACAACCATCAACAAGATCCTCTCTTCTCTCCTTTC TCCGTAACACCACCCCCACACCAATCTCCCTAAAGCTCTCTCATTCACGCAATTCTTTCTTGAATTCTCATTCTTCTTCATCCCGTTCTTTATCCATCAA GAATGCTACAAAAACAATAGAATCAGCTGAAACATCAAGAGTGTCCAAGGTTGGAGGGCAAGATGCAGATTCTCAAGAAACAAAGCCAACAATCTTGGTC TCCGAGAAACTTGGAGAAGCTGGTCTTGAGCTTTTACGTAGCTTTGGTGATGTAGATTGTTCTTATGATCTTTCACAAGAAGATCTTTGCAAGAAAATTG CATCATGCGATGCATTGATCGTTAGAAGTGGTACTAAGGTTACCAGGCAGGTTTTTGAGGCTGCTAAAGGGAAGTTGAAGGTTGTAGGAAGGGCTGGTGT TGGCATTGACAATGTAGATCTACAAGCTGCCACAGAATTTGGTTGCTTGGTGGTCAATGCACCAACTGCTAACACTGTTGCTGCTGCTGAACATGGGATT GCCCTGCTTGCCGCCATGGCTAGAAATGTTGCACAGGCTGATGCCTCCATGAAAGCTGGGCAATGGCAGAGGAACAAGTATGTTGGCGTGTCTTTAGTTG GGAAGACATTGGCTGTGATGGGATTCGGGAAAGTTGGGTCTGAAGTGGCTAGACGTGCAAAAGGTTTGGGAATGCAAGTTATTGCCCATGACCCATATGC CCCAGCTGACAGGGCCCGTGCCATTGGCGTAGAGTTGGTGTCTTTTGATCAGGCCATCTCCACCGCTGATTTCATCTCTCTTCATATGCCACTCACTCCT AGCACTGAAAAGGTGTTCAATGACGACACTTTTGCAAAGGTGAAGACGGGAGTTCGAATCATCAATGTAGCTAGAGGTGGAGTTATTGATGAAGATGCTT TAGTGAGGGCCCTTGATAGTGGAAAAGTTGCTCAGGCAGCACTGGATGTTTTCACAGAGGAACCTCCACCAAAAGATAGCAAATTAGTGCAACATGAGAG AGTCACTGTCACACCTCATCTTGGAGCCAGCACAAAGGAAGCACAGGAAGGTGTAGCTATCGAAATAGCAGAAGCCGTTGTCGGAGCCTTGCAAGGGGAA CTTGCTGCTACGGCCGTGAATGCTCCTATGGTTCCTGCTGAAGTTTTGTCAGAATTGGCTCCTTATGTTGTGCTAGCTGAGAAGCTAGGTAGGCTGGCGG TACAGCTAGTGGCTGGAGGTAGTGGAATAAAGTCTGCGAAGGTGGTTTACAGATCATCTCGAGACCCAGATGACTTGGACACAAGACTTCTCCGAGCCAT GATCACAAAAGGCATCATTGAACCAATATCAGACTCGTTTATCAACCTTGTCAACGCAGACTTCACAGCCAAGCAAAAAGGCCTCCGCATTAGCGAGGAA CGTGTGGTTGTCGACACATCCCCCGAGTTCCCAATTCACTCAATCCAGGTACAACTATCCAACGTGGATTCCAAATTTGGAAGTGGTGTTTCAGAAGGTG GAGACATAAGCATCGAGGGTAGAGTGAAATATGGTAAACCCCATTTGACTCGGGTAGGATCATTCAGCGTTGATGTCAGCCTGGAAGGCAATCTCATTCT TTGCAGGCAGGTTGATCAGCCTGGGATGATTGGTCAGGTTGGAAACATACTTGGCGAGCAAAATGTAAACGTGAGCTTCATGAGCGTGGGGAGAACTGTT CAGAGGAGAAAGGCCATTATGGCAATTGGGGTGGATGAAGAGCCCAACCAGGAAACCCTAAAAAAAATTGGTGAAGTACCAGCTATCGAAGAGTTTGTGT TCCTCAAGCTATAG
AA sequence Show only first row Show all	>Potri.008G009500.1 pacid=42806653 polypeptide=Potri.008G009500.1.p locus=Potri.008G009500 ID=Potri.008G009500.1.v4.1 annot-version=v4.1 MASSSTKPISTPPFTTTISSSSQPSTRSSLLSFLRNTTPTPISLKLSHSRNSFLNSHSSSSRSLSIKNATKTIESAETSRVSKVGGQDADSQETKPTILV SEKLGEAGLELLRSFGDVDCSYDLSQEDLCKKIASCDALIVRSGTKVTRQVFEAAKGKLKVVGRAGVGIDNVDLQAATEFGCLVVNAPTANTVAAAEHGI ALLAAMARNVAQADASMKAGQWQRNKYVGVSLVGKTLAVMGFGKVGSEVARRAKGLGMQVIAHDPYAPADRARAIGVELVSFDQAISTADFISLHMPLTP STEKVFNDDTFAKVKTGVRIINVARGGVIDEDALVRALDSGKVAQAALDVFTEEPPPKDSKLVQHERVTVTPHLGASTKEAQEGVAIEIAEAVVGALQGE LAATAVNAPMVPAEVLSELAPYVVLAEKLGRLAVQLVAGGSGIKSAKVVYRSSRDPDDLDTRLLRAMITKGIIEPISDSFINLVNADFTAKQKGLRISEE RVVVDTSPEFPIHSIQVQLSNVDSKFGSGVSEGGDISIEGRVKYGKPHLTRVGSFSVDVSLEGNLILCRQVDQPGMIGQVGNILGEQNVNVSFMSVGRTV QRRKAIMAIGVDEEPNQETLKKIGEVPAIEEFVFLKL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G17745		PGDH	D-3-phosphoglycerate dehydroge...		Potri.008G009500 [exp]	0	1
AT5G65020		ANNAT2	annexin 2 (.1.2)		Potri.007G092500 [exp]	8.48	0.8353	ANN1.2
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.010G040800 [exp]	15.29	0.8122
AT3G15540	AUX_IAA	MSG2, IAA19	MASSUGU 2, indole-3-acetic aci...		Potri.001G177500 [exp]	21.90	0.7927
AT3G52360			unknown protein		Potri.006G200000 [exp]	26.49	0.7185
AT1G13440		GAPC2, GAPC-2	GLYCERALDEHYDE-3-PHOSPHATE DEH...		Potri.012G094100 [exp]	27.12	0.7610	GAPDH1.1
AT5G08690			ATP synthase alpha/beta family...		Potri.008G126600 [exp]	30.00	0.7890	ATP.2
AT3G24480			Leucine-rich repeat (LRR) fami...		Potri.006G158814 [exp]	31.11	0.7663
					Potri.008G101675 [exp]	38.40	0.7504
AT1G70370		PG2	polygalacturonase 2 (.1.2)		Potri.008G190000 [exp]	40.98	0.7666
AT5G15650		REVERSIBLYGLYCO...	reversibly glycosylated polype...		Potri.017G099100 [exp]	41.49	0.7550

Compare expression of checked genes

Potri.008G009500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.