Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G73050 785 / 0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G12570 465 / 1e-158 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G72970 453 / 5e-154 HTH, EDA17 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT3G56060 439 / 2e-148 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51950 433 / 4e-146 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) AT1G14190 384 / 4e-128 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT5G51930 386 / 9e-128 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) AT1G14185 382 / 2e-127 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G111500 [exp] 476 / 5e-163 AT1G12570 773 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.001G200800 [exp] 444 / 2e-150 AT1G72970 831 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.003G039000 [exp] 444 / 3e-150 AT1G72970 808 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G168200 [exp] 391 / 2e-130 AT1G14190 598 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.008G087400 [exp] 385 / 2e-128 AT1G14185 639 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.010G168100 [exp] 374 / 9e-124 AT1G14185 654 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Potri.012G135200 [exp] 320 / 9e-104 AT5G51950 525 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Potri.010G249501 [exp] 187 / 3e-57 AT1G73050 164 / 7e-49 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033390 [exp] 729 / 0 AT1G73050 697 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10034845 [exp] 724 / 0 AT1G73050 699 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10024487 [exp] 462 / 2e-157 AT1G12570 709 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10017827 [exp] 457 / 7e-156 AT1G12570 710 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1) Lus10003176 [exp] 449 / 4e-152 AT1G72970 822 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10037640 [exp] 447 / 2e-151 AT1G72970 768 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015623 [exp] 456 / 9e-149 AT1G72970 777 / 0.0 HOTHEAD, embryo sac development arrest 17, Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10027406 [exp] 428 / 6e-144 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10031663 [exp] 426 / 3e-143 AT5G51950 694 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2) Lus10015012 [exp] 422 / 5e-142 AT5G51950 667 / 0.0 Glucose-methanol-choline (GMC) oxidoreductase family protein (.1), Glucose-methanol-choline (GMC) oxidoreductase family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00732 [poplar] [flax] GMC_oxred_N GMC oxidoreductase CL0063 [poplar] [flax] PF05199 [poplar] [flax] GMC_oxred_C GMC oxidoreductase
Representative CDS sequence Show only first row Show all	>Potri.008G009600.2 pacid=42805873 polypeptide=Potri.008G009600.2.p locus=Potri.008G009600 ID=Potri.008G009600.2.v4.1 annot-version=v4.1 ATGAAGAAACCCTTTTGTTTTTTCTTGATACACATTGTGTTCTTGGTGCTGTTTTGTTCACTTTTTTCACACGCAAGACCAATCCCTCAAACAGACCCAA ATTATCTCAAGTTTGTGTTAAATGCCACTGAATTTCCATCAGAGGACTACTATGATTACATTGTTGTCGGAGGAGGCACCACTGGCTGCCCATTGGCAGC GACATTGTCGCAGTCATATAGAGTTCTTTTACTTGAACGTGGCGGTGTTCCTTTTGGAAAACACAATTTGATGAGTCAAGATGGCTTCTTGTCAACCCTA AATGATGTGGATACCTTCGATTCACCTGCCCAAGCCTTCACGTCGGAGGATGGTGTCCCTAATGCAAGAGGTCGAGTTCTTGGTGGCAGCAGTGCCATCA ATGCTGGATTTTATAGCCGAGCTGACCCGGCTTTCTTTCAGCAATCAGGTGTGGAATGGGACCTCAACATTGTGAATCAGGCCTATGAATGGGTTGAGAA GGCAATTGTGTTTAGACCAGAGCTTAGAAACTGGCAATCTGCTGTTAGAGATGGACTTCTGGAGGCTGGGGTTGAACCATATACTGGTTTCAGTTTGGAG CATGTGGTTGGCACAAAGATTGGAGGCTCTACCTTTGATGGTTCAGGGAGGAGACACAGTGCTGCTGATCTTCTTAACTATGCAAATGCAGACAATATTC AAGTTGCAGTTCATGCAAGTGTGGAAAGAATCCTATTAGCATCCACTTCTCAGTATTCAAGGTCTCGGCTGTCGGCTATTGGAGTAGTTTACCGTGATAA GAAAGGAAGGTATCACCATGCAATGGTGCGTGAAAAAGGTGAAGTGATGCTATCTGCAGGTGCCATTGGGAGTCCACAGCTACTCTTAATAAGTGGCATT GGTCCAAGGTCCTACCTTTCATCTTTGGGGATTCCAGTGGCCTACCATCTTCCATATGTGGGGCAATACCTCTATGATAATCCTCGCAATGGGATCTCTA TTGTGCCTCCAATGCCACTGGAGAATTCACTGATTCAGGTGGTTGGTATTACTGAGGTGGGAGCTTATCTTGAAGCAGCTTCGACAGTTATCCCTTTAGT ATCCCCTTCCCGTGCTGTTTTCTTTAGGACACCTTCCATCTCACCTTTATATCTGACAGTGGCCACGCTTATGGAGAAAATAGCTGGACCACTTTCAACG GGGTCCCTAAGACTGGCTTCCACGGATGTTAGAGTGAATCCAATTGTGCGCTTCAATTACTTCTCCAATCCTGTGGATGTTGAAAGGTGTGTGAATGGAA CACGCAAGATTGGGGATGTGCTGAGGAGTAGGTCTATGGAGGACTTCATGTTCCGGGGATGGTTTGGAGCTCGAAATTTCCGGTATGTGGGGCCTGCATT GCCTGTAGACCTTTCTGATTTTACTCAGATGGCTGAATTTTGTCGCCGGACTGTTAGCACCATATGGCATTACCATGGTGGCTGTGTTGTGGGAAAGGTG GTTGATCGTGATTACCACCTGATCGGTGTTGGTGCACTTCGAGTTGTTGATGGCTCAACATTGACTGTGTCACCAGGGACCAATCCTCAGGCCACTTTGA TGATGCTTGGGAGATATCTTGGGCTAAAGATAATTAGAGAGCGGATGAAATTTAATTGA
AA sequence Show only first row Show all	>Potri.008G009600.2 pacid=42805873 polypeptide=Potri.008G009600.2.p locus=Potri.008G009600 ID=Potri.008G009600.2.v4.1 annot-version=v4.1 MKKPFCFFLIHIVFLVLFCSLFSHARPIPQTDPNYLKFVLNATEFPSEDYYDYIVVGGGTTGCPLAATLSQSYRVLLLERGGVPFGKHNLMSQDGFLSTL NDVDTFDSPAQAFTSEDGVPNARGRVLGGSSAINAGFYSRADPAFFQQSGVEWDLNIVNQAYEWVEKAIVFRPELRNWQSAVRDGLLEAGVEPYTGFSLE HVVGTKIGGSTFDGSGRRHSAADLLNYANADNIQVAVHASVERILLASTSQYSRSRLSAIGVVYRDKKGRYHHAMVREKGEVMLSAGAIGSPQLLLISGI GPRSYLSSLGIPVAYHLPYVGQYLYDNPRNGISIVPPMPLENSLIQVVGITEVGAYLEAASTVIPLVSPSRAVFFRTPSISPLYLTVATLMEKIAGPLST GSLRLASTDVRVNPIVRFNYFSNPVDVERCVNGTRKIGDVLRSRSMEDFMFRGWFGARNFRYVGPALPVDLSDFTQMAEFCRRTVSTIWHYHGGCVVGKV VDRDYHLIGVGALRVVDGSTLTVSPGTNPQATLMMLGRYLGLKIIRERMKFN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G73050			Glucose-methanol-choline (GMC)...		Potri.008G009600 [exp]	0	1
AT3G08710		TRXH9, ATH9	THIOREDOXIN TYPE H 9, thioredo...		Potri.019G062000 [exp]	5.47	0.8416
AT5G23860		TUB8, b-TUB	tubulin beta 8 (.1.2)		Potri.016G107300 [exp]	14.35	0.8900
AT5G55830			Concanavalin A-like lectin pro...		Potri.001G368300 [exp]	14.69	0.8547
AT5G49720		TSD1, IRX2, DEC...	TUMOROUS SHOOT DEVELOPMENT 1, ...		Potri.001G078900 [exp]	18.08	0.8859	KOR1.2
AT2G20840			Secretory carrier membrane pro...		Potri.019G104000 [exp]	22.89	0.8766
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Potri.005G029300 [exp]	25.49	0.8567	Pt-SNF4.2
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145832 [exp]	30.59	0.8726
AT1G05910			cell division cycle protein 48...		Potri.017G031400 [exp]	42.07	0.8555
AT5G24170			Got1/Sft2-like vescicle transp...		Potri.012G012700 [exp]	63.72	0.8415
AT1G75280			NmrA-like negative transcripti...		Potri.005G228700 [exp]	63.99	0.8323	PCBER7

Compare expression of checked genes

Potri.008G009600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.