Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55915 314 / 2e-105 zinc ion binding (.1) AT5G35690 67 / 5e-12 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G249400 [exp] 359 / 9e-125 AT1G55915 157 / 3e-45 zinc ion binding (.1) Potri.011G092900 [exp] 332 / 4e-112 AT1G55915 429 / 5e-149 zinc ion binding (.1) Potri.014G160400 [exp] 61 / 7e-10 AT5G35690 440 / 2e-146 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016607 [exp] 323 / 1e-108 AT1G55915 431 / 4e-150 zinc ion binding (.1) Lus10037337 [exp] 268 / 2e-89 AT1G55915 214 / 5e-68 zinc ion binding (.1) Lus10035762 [exp] 224 / 1e-72 AT1G55915 155 / 2e-45 zinc ion binding (.1) Lus10035761 [exp] 174 / 9e-55 AT1G55915 134 / 4e-39 zinc ion binding (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00641 [poplar] [flax] zf-RanBP Zn-finger in Ran binding protein and others CL0126 [poplar] [flax] Peptidase_MA PF08325 [poplar] [flax] WLM WLM domain
Representative CDS sequence Show only first row Show all	>Potri.008G009700.1 pacid=42807193 polypeptide=Potri.008G009700.1.p locus=Potri.008G009700 ID=Potri.008G009700.1.v4.1 annot-version=v4.1 ATGGATCTTAATGACCTCAACAAAGTATGGGAAATCAAACCATTGAAAAAGATTGGAGAAGAAGATGCAAGGAAAGTCCTTGAAAGGGTAGCAAAACAAG TACAACCCATCATGAAAAAACGCAAATGGAAAGTCAAAATCTTGTCTGAATTCTGTCCTGCAAATCCAGCTCTTTTGGGGCTGAATATAGGAGGAGGTGC AGAGGTTAAATTGAGATTGAGGAGACCAAATAATGAGTGGGATTTCTTTCCTTATGAGCAAGTTCTTGATACTATGTTGCATGAGCTTTGCCACAATGAG TATGGACCTCATAATTCTGGTTTTTACAACCTTCTTGATGAAATTAGAAAGGAAAGCGAGGAACTGATGGCTAAAGGAATTACTGGAACTGGGGAAGGAT TTGATCTTCCTGGGAGACGGTTGGGTGGGTTCTCCCGTCAACCACCTCTGTCATTATTGCGCCAGTCTGCTTTGGCTGCCACAGAGAACAGAGCACGTCG CGATGCTCTCTTGCCATCAGGTCCTAAACGTGTAGGTGGTGACAGCAATATTAAGGCTGCGCTCAGCCCAATACAAGCTGCTGCCATGGCTGCAGAAAAG AGATTACAAGATGACTTGTGGTGTGGTTCCAAATCTTCAGACAGTGTCGTTACTGTCAATGGAAATATTGAACGTCCTGAAGGGTCAAGCACTTCCATAA GTTCCAAGGGCATAGCCACCCAAATTTCGCCTGGGACATCCATGAATGCTCGGGAACCAAGACATGATCATCCAACATGGCAGTGTAATACCTGTACTCT ATTGAATCAGCCAATGGCGCTGGTATGTGAAGCCTGTGGGACCCAAAGACTTAAAGATGTTGCCAAGTTCAAGTCTTGGTCTTGTAAGTTCTGTACCTTA GAGAACAGTGTGGAATTGGACAGGTGCATGGCTTGTGGAGAATGGAGATATTCATATGGCCCGCCAGCGACCCTATATAGGCACTTGAGAAGATAG
AA sequence Show only first row Show all	>Potri.008G009700.1 pacid=42807193 polypeptide=Potri.008G009700.1.p locus=Potri.008G009700 ID=Potri.008G009700.1.v4.1 annot-version=v4.1 MDLNDLNKVWEIKPLKKIGEEDARKVLERVAKQVQPIMKKRKWKVKILSEFCPANPALLGLNIGGGAEVKLRLRRPNNEWDFFPYEQVLDTMLHELCHNE YGPHNSGFYNLLDEIRKESEELMAKGITGTGEGFDLPGRRLGGFSRQPPLSLLRQSALAATENRARRDALLPSGPKRVGGDSNIKAALSPIQAAAMAAEK RLQDDLWCGSKSSDSVVTVNGNIERPEGSSTSISSKGIATQISPGTSMNAREPRHDHPTWQCNTCTLLNQPMALVCEACGTQRLKDVAKFKSWSCKFCTL ENSVELDRCMACGEWRYSYGPPATLYRHLRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55915			zinc ion binding (.1)		Potri.008G009700 [exp]	0	1
AT1G48170			unknown protein		Potri.008G099700 [exp]	1.00	0.8199
AT1G78910			Pseudouridine synthase family ...		Potri.004G228200 [exp]	3.00	0.7477
AT3G56680			Single-stranded nucleic acid b...		Potri.006G034700 [exp]	4.89	0.7721
AT3G56680			Single-stranded nucleic acid b...		Potri.016G032500 [exp]	5.83	0.7925
AT3G13460		ECT2	evolutionarily conserved C-ter...		Potri.001G002000 [exp]	6.00	0.7763
AT1G51200			A20/AN1-like zinc finger famil...		Potri.003G205500 [exp]	14.14	0.7718
AT1G45976		SBP1	S-ribonuclease binding protein...		Potri.002G124700 [exp]	15.23	0.7497
AT4G35940			unknown protein		Potri.009G134800 [exp]	18.70	0.6852
AT5G59300		ATUBC7, UBC7	ARABIDOPSIS THALIANA UBIQUITIN...		Potri.008G053800 [exp]	19.77	0.6984	Pt-UBC13.3
AT3G21310			Core-2/I-branching beta-1,6-N-...		Potri.001G195900 [exp]	25.03	0.6761

Compare expression of checked genes

Potri.008G009700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.