Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G25140 670 / 0 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT3G02350 591 / 0 GAUT9 galacturonosyltransferase 9 (.1) AT3G61130 439 / 1e-145 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 432 / 8e-144 GAUT4 galacturonosyltransferase 4 (.1) AT4G38270 432 / 1e-142 GAUT3 galacturonosyltransferase 3 (.1.2) AT1G18580 384 / 4e-126 GAUT11 galacturonosyltransferase 11 (.1) AT2G20810 369 / 3e-120 GAUT10, LGT4 galacturonosyltransferase 10 (.1) AT2G46480 338 / 2e-108 GAUT2, LGT2 galacturonosyltransferase 2 (.1) AT3G01040 323 / 1e-102 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 318 / 2e-100 GAUT14 galacturonosyltransferase 14 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G246500 [exp] 687 / 0 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.004G111000 [exp] 607 / 0 AT3G02350 860 / 0.0 galacturonosyltransferase 9 (.1) Potri.017G106800 [exp] 598 / 0 AT3G02350 812 / 0.0 galacturonosyltransferase 9 (.1) Potri.002G151400 [exp] 433 / 3e-143 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1) Potri.014G073800 [exp] 431 / 2e-142 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.004G206000 [exp] 422 / 6e-139 AT4G38270 881 / 0.0 galacturonosyltransferase 3 (.1.2) Potri.016G001700 [exp] 420 / 2e-138 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.006G001100 [exp] 413 / 1e-136 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.019G108900 [exp] 383 / 1e-125 AT2G20810 838 / 0.0 galacturonosyltransferase 10 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011834 [exp] 664 / 0 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10003045 [exp] 573 / 0 AT3G02350 827 / 0.0 galacturonosyltransferase 9 (.1) Lus10022766 [exp] 474 / 5e-165 AT3G25140 568 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10009311 [exp] 442 / 7e-147 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10041389 [exp] 431 / 6e-143 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1) Lus10038739 [exp] 431 / 1e-142 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10036540 [exp] 431 / 4e-141 AT3G61130 1015 / 0.0 galacturonosyltransferase 1 (.1) Lus10018554 [exp] 397 / 3e-131 AT2G20810 872 / 0.0 galacturonosyltransferase 10 (.1) Lus10026546 [exp] 412 / 1e-130 AT4G38270 899 / 0.0 galacturonosyltransferase 3 (.1.2) Lus10013832 [exp] 392 / 3e-119 AT2G17140 1034 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.008G010000.2 pacid=42808460 polypeptide=Potri.008G010000.2.p locus=Potri.008G010000 ID=Potri.008G010000.2.v4.1 annot-version=v4.1 ATGCTAGCAATGCTGGATTTTACAATTATAGTCCTGGCCACGAACCAGACACAGTTTATGGTCTTTATCTTTGCCGAGGAGATGTCTCCCTTAGTCTATG TCGCGAGTGCATCGCGAAAGCAAGTTGCGACTTCTTACAGCTGTGTCCTAACAGCTCCGAGGCCTTTGTATGGTATGATCAATGCATGCTACGCATCGCA GCTTCCTCGTCTGTTAGAGACTCAACCATACGGTTATGTTTACAACAATTCTAGACTTGAAACGGCCGATGTTTTGGCGAATGATTTTTTACCGAGATTT ATAGAATCTGTCGGACAGTCGAAATCCATGTTTGTCCGAGACTGTTATAACGGTACTGGGAACGAGATGAGGAGCAGAAGAAGAGTGGCATTGAGTTTCC TTTTTTCCTTCAAGGGTTTAGCCTCTACCATTGCGGTTATGGGCTGCTTCTTCTTCACTTGCTCCTTCCTCCTCAACGTTCATGTTGGTTCTTCCACTCC CACTGACCATGATGTTTTAGGTTTGAAACAATATGAACGTAATGACGGGAGACATCCACTTTCTCTCACATCAAACGCTCTCAAGGCCCAGTTGAAGGAA ACTGTGCGGTCAGTGGTTGACTACCAAGGCTTGGTGCTTATGCATGGTTCCATAGCTCGGAAACTAAAACTTGAGAACTCTAAGCTTGTTAGGAATTTTG CTGAGATTTCGATAAACTTCACAGATCTCATAAAAAAGGCTTCTCACTGTGATGTTTCAGATTCCAATACAGCATTGGTACACCGATTTCTAAAGCAGGC GAAAGAGAAAGTTAAATTTGCTAAGCAATTGATCTCTAACTCAAAAGGGTCTTTTGATAGTCAACTCAAGATTCAAAAACTGAAAGACACAATTTTTGGT TTGGAGGGACAGATGACAAAAATGAAAACTAAAGGTGAGCTCGCGAAATCAATTGCTGCAAAAGCAATCCCAAGAAACTTGCATTGCCTTGCATTGCGGT TAATGCAAGAGAGGATTGAGAATCCTATTCGTTACATCAACAAACAGACGAAGTCACGGCAGCCACGGCAAGAGTTTGAAGATCCGAATCTTTACCATTA TGCTATATTTTCAGATAATGTTCTTGCAGCTTCAGTGGTGGTGAATTCAGTGGTGCAAAACGCAAAGGAGCCATGGAAACATGTTTTACATATTGTGACA GAGAGGACAACTCTTGCAGCAATGAAAGTGATGTTCAAGTTGAAAGACCACAATGGGACGCACATTGAAGTGAAAGCAGTTGAAGATTACAAATTCCTGA ACTCATCTTATGTGCCAGTGCTTCGACAACAAGAATCTGCAGAGTTGCTGGGATATTATTATGGGAATGGACTCGAAAACTCGACAACCGGCTCTAGCAA CTTAAAGTTCAGGAACCCCAAGTATTTATCTATGCTGAACCATTTGAGGTTTTATTTGCCAGAAATGTATCCAAAATTGCACAAGATTTTATTTTTAGAT GATGATGTAGTGGTTCAAAAGGACTTGACAGGGTTGTGGGAGATTGACATGGATGGGAAAGTGAATGGAGCGGTCGAGACATGTTTTGGGTCATTCCATC GATATGATAAATACTTGAAGTTTGATCATCCTTTGATTAAGGAGACGTTCGATCCCAAGGCATGTGCATGGGCTTATGGAATGAACATTTTTGATTTAGA TTCCTGGAGAAGAGACAACTGTACTGAAAAGTATCATTATTGGCAAGAGTTGAATGGGAATCGAACTTTGTGGAGGTTGGGGACACTGCCACCAGGTTTA ATCACATTTTATTCCACAACAAAGCCACTAGACAAGTCATGGCATGTTCTAGGGCTAGGCTATAACCCAGGACTTAGCGAGGAGAAGATTCAAAATGCTG CAGTTATTCACTACAATGGAGATTCAAAACCTTGGCTTGCCACCGCCATTCCTAGGTACCAGCCGCTTTGGACAAAGTATGTCGACTATGATCTGGAGTT TTTCCGAGCCTGCAACTTTGCCCCCTAA
AA sequence Show only first row Show all	>Potri.008G010000.2 pacid=42808460 polypeptide=Potri.008G010000.2.p locus=Potri.008G010000 ID=Potri.008G010000.2.v4.1 annot-version=v4.1 MLAMLDFTIIVLATNQTQFMVFIFAEEMSPLVYVASASRKQVATSYSCVLTAPRPLYGMINACYASQLPRLLETQPYGYVYNNSRLETADVLANDFLPRF IESVGQSKSMFVRDCYNGTGNEMRSRRRVALSFLFSFKGLASTIAVMGCFFFTCSFLLNVHVGSSTPTDHDVLGLKQYERNDGRHPLSLTSNALKAQLKE TVRSVVDYQGLVLMHGSIARKLKLENSKLVRNFAEISINFTDLIKKASHCDVSDSNTALVHRFLKQAKEKVKFAKQLISNSKGSFDSQLKIQKLKDTIFG LEGQMTKMKTKGELAKSIAAKAIPRNLHCLALRLMQERIENPIRYINKQTKSRQPRQEFEDPNLYHYAIFSDNVLAASVVVNSVVQNAKEPWKHVLHIVT ERTTLAAMKVMFKLKDHNGTHIEVKAVEDYKFLNSSYVPVLRQQESAELLGYYYGNGLENSTTGSSNLKFRNPKYLSMLNHLRFYLPEMYPKLHKILFLD DDVVVQKDLTGLWEIDMDGKVNGAVETCFGSFHRYDKYLKFDHPLIKETFDPKACAWAYGMNIFDLDSWRRDNCTEKYHYWQELNGNRTLWRLGTLPPGL ITFYSTTKPLDKSWHVLGLGYNPGLSEEKIQNAAVIHYNGDSKPWLATAIPRYQPLWTKYVDYDLEFFRACNFAP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G25140		QUA1, GAUT8	QUASIMODO 1, GALACTURONOSYLTRA...		Potri.008G010000 [exp]	0	1
					Potri.001G227750 [exp]	11.57	0.9217
AT5G60910	MADS	FUL, AGL8	FRUITFULL, AGAMOUS-like 8 (.1....		Potri.017G099800 [exp]	26.53	0.8525	Pt-MADS12.7
AT1G23710			Protein of unknown function (D...		Potri.018G096400 [exp]	32.03	0.8867
AT1G78940			Protein kinase protein with ad...		Potri.014G001700 [exp]	36.60	0.9010
AT5G25620		YUC6	YUCCA6, Flavin-binding monooxy...		Potri.007G028200 [exp]	36.78	0.8935	FML8
AT1G22150		SULTR1;3	sulfate transporter 1;3 (.1)		Potri.005G167300 [exp]	41.66	0.8982
AT1G24540		CYP86C1	"cytochrome P450, family 86, s...		Potri.010G050100 [exp]	45.16	0.8930	CYP86.1
					Potri.003G116550 [exp]	45.43	0.8637
AT4G18250			receptor serine/threonine kina...		Potri.017G009600 [exp]	65.87	0.8804
AT3G55646			unknown protein		Potri.008G061700 [exp]	76.31	0.8707

Compare expression of checked genes

Potri.008G010000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.