Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G33840 460 / 1e-163 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) AT1G28350 416 / 2e-141 Nucleotidylyl transferase superfamily protein (.1) AT3G04600 41 / 0.0007 Nucleotidylyl transferase superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248900 [exp] 550 / 0 AT2G33840 602 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Potri.003G158000 [exp] 42 / 0.0005 AT2G25840 549 / 0.0 ovule abortion 4, Nucleotidylyl transferase superfamily protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032773 [exp] 479 / 1e-170 AT2G33840 598 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Lus10029613 [exp] 481 / 2e-168 AT2G33840 599 / 0.0 Tyrosyl-tRNA synthetase, class Ib, bacterial/mitochondrial (.1) Lus10009938 [exp] 165 / 5e-50 AT1G28350 290 / 5e-98 Nucleotidylyl transferase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0039 [poplar] [flax] HUP PF00579 [poplar] [flax] tRNA-synt_1b tRNA synthetases class I (W and Y)
Representative CDS sequence Show only first row Show all	>Potri.008G010201.2 pacid=42808162 polypeptide=Potri.008G010201.2.p locus=Potri.008G010201 ID=Potri.008G010201.2.v4.1 annot-version=v4.1 ATGGAAGAGAATGACCGAACCCCTCCATCTGAAGAGATGCAACCCCTCTCTGTCACCCCTTCAGCTTCACCCTCATCAAATCCCTCTACACCCCAGGTGA TGAGTTTAGAGGAAAGGTTTCAACTTGTGAGAAGTGTTGGTGAAGAATGCATCCAAGAAGATGAACTACGTAATCTTCTTGATAAAAAACCGCTACCCAT TTGTTATGATGGTTTTGAACCTTCTGGGAGAATGCACATTGCTCAGGGAGTTATGAAGACAATAAATGTCAACAAGCTGACTAAAGCTGGTTGCAAAGTG AAAATTTGGATTGCTGACTGGTTTGCGCAACTAAATAACAAAATGGGAGGAGACTTGAAGAAAATTAAAACAGTGGGAGAATATCTTATTGAGATATGGA AGGCAGTTGGGATGGATATTGATGGAGATAAAGTCGAGTTTTTGTGGTCTTCCGACGAAATCAACTCCAGGGCTCATGAATACTGGCCTCTTGTTATGGA TATAGCTCGCAGGAACAAGCTTCCTAGGATAATGAGATGTGTTCAAATCATGGGCCGTAGTGAGCAGGATGAGCTAACGGCAGCCCAGATTTTCTACCCA TGCATGCAATGTGCAGACATATTTTTCCTCAAGGCTGACATTTGTCAATTGGGGATGGATCAACGGAAAGTGAACGTCCTTGCAAGAGAATACTGTGATG ACATAAAGAGGAAAAACAAGCCTATCATTTTATCTCATCACATGCTACCTGGTTTACAGCAAGGGCAAGAAAAGATGTCAAAAAGTGATCCATCTTCCTC CATCTTCATGGAGGATGAAGAGGCAGAGGTGAAAACTAAGATAAAGAAGGCATATTGCCCCCCCCCCCCAAATTGCCGAGGGCAATCCTTGTCTGGAATA CATTAA
AA sequence Show only first row Show all	>Potri.008G010201.2 pacid=42808162 polypeptide=Potri.008G010201.2.p locus=Potri.008G010201 ID=Potri.008G010201.2.v4.1 annot-version=v4.1 MEENDRTPPSEEMQPLSVTPSASPSSNPSTPQVMSLEERFQLVRSVGEECIQEDELRNLLDKKPLPICYDGFEPSGRMHIAQGVMKTINVNKLTKAGCKV KIWIADWFAQLNNKMGGDLKKIKTVGEYLIEIWKAVGMDIDGDKVEFLWSSDEINSRAHEYWPLVMDIARRNKLPRIMRCVQIMGRSEQDELTAAQIFYP CMQCADIFFLKADICQLGMDQRKVNVLAREYCDDIKRKNKPIILSHHMLPGLQQGQEKMSKSDPSSSIFMEDEEAEVKTKIKKAYCPPPPNCRGQSLSGI H

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G33840			Tyrosyl-tRNA synthetase, class...		Potri.008G010201 [exp]	0	1
AT5G26710			Glutamyl/glutaminyl-tRNA synth...		Potri.013G000400 [exp]	1.00	0.8173
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	6.32	0.8015
AT1G03010			Phototropic-responsive NPH3 fa...		Potri.014G133500 [exp]	7.74	0.7660
AT1G13380			Protein of unknown function (D...		Potri.008G120900 [exp]	12.72	0.7732
AT1G64460			Protein kinase superfamily pro...		Potri.002G171400 [exp]	14.66	0.6777
AT5G41685			Mitochondrial outer membrane t...		Potri.018G146602 [exp]	16.24	0.7225
AT2G17420		NTR2, ATNTRA, N...	NADPH-DEPENDENT THIOREDOXIN RE...		Potri.011G145100 [exp]	16.73	0.7501
AT4G16447			unknown protein		Potri.014G165000 [exp]	18.70	0.6953
AT5G39950		ATTRXH2, ATTRX2...	Arabidopsis thioredoxin h2, th...		Potri.017G076700 [exp]	20.04	0.7483	PtrTrxh2
AT1G75500		WAT1	Walls Are Thin 1 (.1.2)		Potri.005G233600 [exp]	21.33	0.7455

Compare expression of checked genes

Potri.008G010201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.