Plant FIBer expression Database

Potri.008G010300 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G10865 124 / 2e-39 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G248800
[exp]
137 / 1e-44 AT1G10865 120 / 1e-37 unknown protein
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032774
[exp]
109 / 2e-33 AT1G10865 105 / 8e-32 unknown protein
Lus10029612
[exp]
114 / 4e-31 AT3G04470 857 / 0.0 Ankyrin repeat family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10203 Pet191_N Cytochrome c oxidase assembly protein PET191
Representative CDS sequence
>Potri.008G010300.1 pacid=42805780 polypeptide=Potri.008G010300.1.p locus=Potri.008G010300 ID=Potri.008G010300.1.v4.1 annot-version=v4.1
ATGTCAAAGTCTTGCAAGGGACTTGCAATGGAACTGGTCAAGTGTCTCAGTGAATCTGATTGTATTAAGATTGAGAATCGATCATATAAAGACTGTGCAG
GAGAGAAGAGCCCTTCCATACCAAGTGAGTGTGTGGGACTTAGAGAAACTTATTTCAATTGCAAGAGAGGCCAGGTTGACATGAGAGCTAGAATCCGAGG
AAACAAGGGTTATTAA
AA sequence
>Potri.008G010300.1 pacid=42805780 polypeptide=Potri.008G010300.1.p locus=Potri.008G010300 ID=Potri.008G010300.1.v4.1 annot-version=v4.1
MSKSCKGLAMELVKCLSESDCIKIENRSYKDCAGEKSPSIPSECVGLRETYFNCKRGQVDMRARIRGNKGY

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G10865 unknown protein Potri.008G010300
[exp]
0 1
AT1G06010 unknown protein Potri.012G134200
[exp]
3.60 0.7310
AT1G16470 PAB1 proteasome subunit PAB1 (.1.2) Potri.012G123550
[exp]
4.24 0.7046
AT1G80860 ATPLMT ARABIDOPSIS PHOSPHOLIPID N-MET... Potri.001G044200
[exp]
4.69 0.6858
AT2G17270 PHT3;3 phosphate transporter 3;3 (.1) Potri.005G098800
[exp]
4.89 0.6679
AT1G52740 HTA9 histone H2A protein 9 (.1) Potri.018G032100
[exp]
5.65 0.7051
Potri.005G209300
[exp]
8.36 0.6967
AT1G08360 Ribosomal protein L1p/L10e fam... Potri.004G202766
[exp]
8.94 0.6961
AT4G02485 2-oxoglutarate (2OG) and Fe(II... Potri.014G131200
[exp]
12.64 0.6891
AT3G62840 Small nuclear ribonucleoprotei... Potri.002G204300
[exp]
12.96 0.7019
AT1G73940 unknown protein Potri.001G453400
[exp]
14.89 0.6967

Potri.008G010300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.