Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G16880 359 / 1e-125 ACR11 ACT domain repeats 11, uridylyltransferase-related (.1.2) AT5G04740 288 / 3e-97 ACR12 ACT domain repeats 12, ACT domain-containing protein (.1.2) AT1G69040 56 / 7e-09 ACR4 ACT domain repeat 4 (.1.2) AT3G01990 56 / 7e-09 ACR6 ACT domain repeat 6 (.1) AT2G03730 56 / 1e-08 ACR5 ACT domain repeat 5 (.1.2) AT5G65890 55 / 2e-08 ACR1 ACT domain repeat 1 (.1.2) AT1G76990 48 / 3e-06 ACR3 ACT domain repeat 3 (.1.2.3.4.5) AT1G12420 43 / 0.0001 ACR8 ACT domain repeat 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G248700 [exp] 490 / 1e-177 AT1G16880 363 / 4e-127 ACT domain repeats 11, uridylyltransferase-related (.1.2) Potri.010G238300 [exp] 284 / 7e-96 AT5G04740 392 / 6e-138 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.008G020700 [exp] 276 / 8e-93 AT5G04740 370 / 1e-129 ACT domain repeats 12, ACT domain-containing protein (.1.2) Potri.012G083000 [exp] 59 / 9e-10 AT1G69040 493 / 3e-173 ACT domain repeat 4 (.1.2) Potri.012G102200 [exp] 59 / 1e-09 AT1G69040 473 / 5e-165 ACT domain repeat 4 (.1.2) Potri.015G100300 [exp] 58 / 3e-09 AT1G69040 483 / 3e-169 ACT domain repeat 4 (.1.2) Potri.008G109200 [exp] 57 / 4e-09 AT1G69040 723 / 0.0 ACT domain repeat 4 (.1.2) Potri.001G327000 [exp] 56 / 7e-09 AT3G01990 630 / 0.0 ACT domain repeat 6 (.1) Potri.T124144 [exp] 56 / 7e-09 AT1G69040 721 / 0.0 ACT domain repeat 4 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033395 [exp] 374 / 2e-131 AT1G16880 375 / 1e-131 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034852 [exp] 372 / 2e-130 AT1G16880 372 / 1e-130 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10033394 [exp] 355 / 6e-124 AT1G16880 357 / 9e-125 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10034851 [exp] 352 / 7e-123 AT1G16880 351 / 3e-122 ACT domain repeats 11, uridylyltransferase-related (.1.2) Lus10036827 [exp] 51 / 3e-07 AT1G69040 702 / 0.0 ACT domain repeat 4 (.1.2) Lus10041543 [exp] 51 / 4e-07 AT3G01990 605 / 0.0 ACT domain repeat 6 (.1) Lus10003136 [exp] 50 / 9e-07 AT1G69040 520 / 0.0 ACT domain repeat 4 (.1.2) Lus10012550 [exp] 50 / 1e-06 AT3G01990 612 / 0.0 ACT domain repeat 6 (.1) Lus10011329 [exp] 47 / 7e-06 AT1G69040 515 / 0.0 ACT domain repeat 4 (.1.2) Lus10019192 [exp] 42 / 5e-05 AT1G69040 172 / 3e-53 ACT domain repeat 4 (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.008G010400.1 pacid=42807096 polypeptide=Potri.008G010400.1.p locus=Potri.008G010400 ID=Potri.008G010400.1.v4.1 annot-version=v4.1 ATGGCTGTGTCCTTGGCTTTTGCTAATCTTCGATTTCACTTTAGTAATGTTAAAGTGGTTGAAAATCCCTTGTGTTTTGGCTTGGCTCCTACACAGCTTC CTTTTTTATGCAAGGAACGAAGAAGATTGTCATCTTCCAGGACAATAATTATTGTGCAAGCTTCATCGGCTCCAACCGTTGAGGATGGAAGTCAAAATGA GACTGATGCAATTCCAACTCCGAAAGTTATAATTGACCAAGACTCTGATCCAGACGCTACTGTGGTGGAAATAACCTTCGGAGATCGCCTTGGTGCTCTT CTGGATACGATGAATGCGCTTAAAAACCTCGGGCTGAATGTTGTTAAGGCTAATGTCTTTTTGGATTCTTCCGGGAAGCACAACACATTTGCCATCACTA AATCTAGTACTGGTAGAAAAGTTGATGACCCAGAGCTGCTGGAGGCCATTCGTTTGACAATCATAAACAATTTGCTTCAGTATCACCCGGAATCAAGTTC ACAGTTAGCAATGGGAATTGCCTTTGGAGTAGAGCAACCAAAACAGGTTGATGTGGATATAGCAACCCATATAAAAGTCAAAGATGATGGTCCTGACCGA AGCTTGTTTTTAGTGGAGACAGCTGATCGACCAGGATTACTGGTGGATCTTGTAAAGAATATCACTGACATTAACATTTCCGTTGAATCAGGAGAATTTG ACACCGAGGGGTTGTTGGCCAAGGCAAAGTTTCATGTCAGCTACAAGGGTAAAGCCATCAGCAAGCCTCTGCAACTGGTTCTCGGTAACAGTTTGCGATA TTTCTTGAGGCGACCAATGACCGAGGAAGCAAGTTTTTGA
AA sequence Show only first row Show all	>Potri.008G010400.1 pacid=42807096 polypeptide=Potri.008G010400.1.p locus=Potri.008G010400 ID=Potri.008G010400.1.v4.1 annot-version=v4.1 MAVSLAFANLRFHFSNVKVVENPLCFGLAPTQLPFLCKERRRLSSSRTIIIVQASSAPTVEDGSQNETDAIPTPKVIIDQDSDPDATVVEITFGDRLGAL LDTMNALKNLGLNVVKANVFLDSSGKHNTFAITKSSTGRKVDDPELLEAIRLTIINNLLQYHPESSSQLAMGIAFGVEQPKQVDVDIATHIKVKDDGPDR SLFLVETADRPGLLVDLVKNITDINISVESGEFDTEGLLAKAKFHVSYKGKAISKPLQLVLGNSLRYFLRRPMTEEASF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G16880		ACR11	ACT domain repeats 11, uridyly...		Potri.008G010400 [exp]	0	1
AT4G32320		APX6	ascorbate peroxidase 6 (.1)		Potri.006G254500 [exp]	2.64	0.9750
AT1G04920		ATSPS3F	sucrose phosphate synthase 3F ...		Potri.001G317600 [exp]	3.16	0.9695
AT2G37220			RNA-binding (RRM/RBD/RNP motif...		Potri.006G127200 [exp]	4.00	0.9681	RBP29.2
AT4G00050	bHLH	bHLH016, UNE10	unfertilized embryo sac 10, ba...		Potri.002G143300 [exp]	5.74	0.9692
AT5G54770		THI4, TZ, THI1	THIAZOLE REQUIRING, THIAMINE4,...		Potri.004G020500 [exp]	5.74	0.9607
AT1G64770		PnsB2, NDH45, N...	Photosynthetic NDH subcomplex...		Potri.019G034100 [exp]	6.00	0.9656
					Potri.003G135200 [exp]	6.32	0.9637
AT5G05740		ATEGY2	ethylene-dependent gravitropis...		Potri.008G066500 [exp]	8.36	0.9645
AT3G05625			Tetratricopeptide repeat (TPR)...		Potri.013G012400 [exp]	8.94	0.9642
AT2G24060			Translation initiation factor ...		Potri.018G104000 [exp]	9.32	0.9523

Compare expression of checked genes

Potri.008G010400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.